Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DUT84_RS18470 Genome accession   NZ_CP031105
Coordinates   3592468..3593073 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AMSCJX02     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3587468..3598073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUT84_RS29495 - 3588022..3588120 (+) 99 Protein_3371 hypothetical protein -
  DUT84_RS18435 (DUT84_18435) rsmS 3588173..3588334 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  DUT84_RS18440 (DUT84_18440) priC 3588348..3588875 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  DUT84_RS18445 (DUT84_18445) ybaN 3588945..3589322 (+) 378 WP_001188905.1 DUF454 family protein -
  DUT84_RS18455 (DUT84_18455) apt 3589475..3590026 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DUT84_RS18460 (DUT84_18460) dnaX 3590155..3592086 (+) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  DUT84_RS18465 (DUT84_18465) ybaB 3592139..3592468 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DUT84_RS18470 (DUT84_18470) recR 3592468..3593073 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DUT84_RS18475 (DUT84_18475) htpG 3593183..3595057 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  DUT84_RS18485 (DUT84_18485) adk 3595238..3595882 (+) 645 WP_001696974.1 adenylate kinase -
  DUT84_RS18490 (DUT84_18490) hemH 3596014..3596976 (+) 963 WP_001250120.1 ferrochelatase -
  DUT84_RS18495 (DUT84_18495) aes 3596973..3597932 (-) 960 WP_000801838.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=262091 DUT84_RS18470 WP_001195025.1 3592468..3593073(+) (recR) [Escherichia coli strain AMSCJX02]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=262091 DUT84_RS18470 WP_001195025.1 3592468..3593073(+) (recR) [Escherichia coli strain AMSCJX02]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443