Detailed information NTG0262045

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DUT84_RS06650
• Genome accession: NZ_CP031105
• Coordinates: 1264171..1265163 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AMSCJX02
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1259171..1270163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DUT84_RS06625 (DUT84_06625)	ygbN	1259825..1261189 (+)	1365	WP_000104429.1	GntP family transporter	-
DUT84_RS06630 (DUT84_06630)	-	1261229..1261465 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
DUT84_RS06635 (DUT84_06635)	-	1261476..1262903 (-)	1428	WP_000863194.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
DUT84_RS06640 (DUT84_06640)	-	1262903..1263496 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
DUT84_RS06645 (DUT84_06645)	-	1263643..1264050 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
DUT84_RS06650 (DUT84_06650)	rpoS	1264171..1265163 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DUT84_RS06655 (DUT84_06655)	nlpD	1265226..1266320 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
DUT84_RS06660 (DUT84_06660)	pcm	1266505..1267131 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DUT84_RS06665 (DUT84_06665)	surE	1267125..1267886 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DUT84_RS06670 (DUT84_06670)	truD	1267867..1268916 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
DUT84_RS06675 (DUT84_06675)	ispF	1268913..1269392 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DUT84_RS06680 (DUT84_06680)	ispD	1269392..1270102 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=262045 DUT84_RS06650 WP_000081550.1 1264171..1265163(-) (rpoS) [Escherichia coli strain AMSCJX02]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=262045 DUT84_RS06650 WP_000081550.1 1264171..1265163(-) (rpoS) [Escherichia coli strain AMSCJX02]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715