Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DUT84_RS02785 Genome accession   NZ_CP031105
Coordinates   483887..485314 (+) Length   475 a.a.
NCBI ID   WP_000980611.1    Uniprot ID   -
Organism   Escherichia coli strain AMSCJX02     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 478887..490314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUT84_RS02745 (DUT84_02745) yeeW 479090..479284 (+) 195 WP_000988599.1 DUF5983 family protein -
  DUT84_RS02750 (DUT84_02750) - 479330..479410 (+) 81 Protein_501 hypothetical protein -
  DUT84_RS02755 (DUT84_02755) - 479699..479845 (-) 147 Protein_502 transposase domain-containing protein -
  DUT84_RS02760 (DUT84_02760) - 479899..480081 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DUT84_RS02765 (DUT84_02765) tmaR 480182..480511 (-) 330 WP_000450409.1 DUF496 family protein -
  DUT84_RS02770 (DUT84_02770) yeeA 480683..481741 (-) 1059 WP_001200891.1 FUSC family protein -
  DUT84_RS02775 (DUT84_02775) sbmC 481940..482413 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  DUT84_RS02780 (DUT84_02780) dacD 482532..483698 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  DUT84_RS02785 (DUT84_02785) sbcB 483887..485314 (+) 1428 WP_000980611.1 exodeoxyribonuclease I Machinery gene
  DUT84_RS02790 (DUT84_02790) tsuB 485357..485584 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  DUT84_RS02795 (DUT84_02795) tsuA 485598..486656 (-) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  DUT84_RS02800 (DUT84_02800) plaP 486835..488193 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  DUT84_RS02805 (DUT84_02805) yoeI 488183..488245 (-) 63 WP_010723108.1 membrane protein YoeI -
  DUT84_RS02810 (DUT84_02810) yeeY 488460..489389 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  DUT84_RS02815 (DUT84_02815) yeeZ 489435..490259 (-) 825 WP_000754754.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=262032 DUT84_RS02785 WP_000980611.1 483887..485314(+) (sbcB) [Escherichia coli strain AMSCJX02]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=262032 DUT84_RS02785 WP_000980611.1 483887..485314(+) (sbcB) [Escherichia coli strain AMSCJX02]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585