Detailed information NTG0262014

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: DTO54_RS25015
• Genome accession: NZ_CP030939
• Coordinates: 4778706..4779731 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain AMSHJX01
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4773706..4784731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DTO54_RS25005 (DTO54_25005)	rpmE	4775937..4776149 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
DTO54_RS25010 (DTO54_25010)	priA	4776352..4778550 (+)	2199	WP_001440832.1	primosomal protein N'	Machinery gene
DTO54_RS25015 (DTO54_25015)	cytR	4778706..4779731 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
DTO54_RS25020 (DTO54_25020)	ftsN	4779823..4780782 (+)	960	WP_000068834.1	cell division protein FtsN	-
DTO54_RS25025 (DTO54_25025)	hslV	4780875..4781405 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
DTO54_RS25030 (DTO54_25030)	hslU	4781415..4782746 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
DTO54_RS25035 (DTO54_25035)	menA	4782813..4783739 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
DTO54_RS25040 (DTO54_25040)	rraA	4783832..4784317 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
DTO54_RS25045 (DTO54_25045)	zapB	4784402..4784647 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=262014 DTO54_RS25015 WP_000644904.1 4778706..4779731(+) (cytR) [Escherichia coli strain AMSHJX01]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=262014 DTO54_RS25015 WP_000644904.1 4778706..4779731(+) (cytR) [Escherichia coli strain AMSHJX01]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628