Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NMC_RS10390 Genome accession   NC_008767
Coordinates   2004654..2005622 (+) Length   322 a.a.
NCBI ID   WP_002252797.1    Uniprot ID   -
Organism   Neisseria meningitidis FAM18     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1999654..2010622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMC_RS14080 - 2000041..2000187 (-) 147 WP_002240086.1 hypothetical protein -
  NMC_RS10380 (NMC1963) fetA 2000909..2003053 (+) 2145 WP_002248163.1 TonB-dependent siderophore receptor FetA/FrpB -
  NMC_RS10385 (NMC1964) - 2003357..2004322 (+) 966 WP_002248164.1 siderophore ABC transporter substrate-binding protein -
  NMC_RS14090 - 2004340..2004489 (+) 150 WP_153317450.1 hypothetical protein -
  NMC_RS10390 (NMC1965) ceuB 2004654..2005622 (+) 969 WP_002252797.1 ABC transporter permease Machinery gene
  NMC_RS10395 (NMC1966) - 2005612..2006586 (+) 975 WP_002254924.1 iron chelate uptake ABC transporter family permease subunit -
  NMC_RS10400 (NMC1967) - 2006631..2007257 (+) 627 WP_002248168.1 FmdE family protein -
  NMC_RS10405 (NMC1968) - 2007342..2008100 (+) 759 WP_011799022.1 ABC transporter ATP-binding protein -
  NMC_RS10410 (NMC1969) - 2008404..2009600 (+) 1197 WP_002248170.1 YadA-like family protein -
  NMC_RS10415 (NMC1971) - 2009666..2010004 (-) 339 WP_002218119.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34446.76 Da        Isoelectric Point: 10.0891

>NTDB_id=26200 NMC_RS10390 WP_002252797.1 2004654..2005622(+) (ceuB) [Neisseria meningitidis FAM18]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMMLIRRLPPTAQLMVPLVGIIFGGVIEAVATFVAY
EFEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFVGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=26200 NMC_RS10390 WP_002252797.1 2004654..2005622(+) (ceuB) [Neisseria meningitidis FAM18]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCTGATGTGTTTTCGCTATCCGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTTTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGTTAATCGGGATGTTGGTGTTTATGATGCTTATCCGCCGCCTGCCGC
CGACCGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGTGTGATTGAGGCAGTGGCGACGTTTGTCGCGTAT
GAGTTTGAGATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATTCCGTTTGTCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCTTTGTTGGGCGCGTCTTTGGTGTTGCTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGGACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391

Multiple sequence alignment