Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CAB17_RS08975 Genome accession   NZ_CP025491
Coordinates   2028134..2028463 (-) Length   109 a.a.
NCBI ID   WP_101900853.1    Uniprot ID   A0A2H5FP90
Organism   Legionella sainthelensi strain LA01-117     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2023134..2033463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB17_RS08950 (CAB17_15600) - 2023959..2024660 (-) 702 WP_414092927.1 protein tyrosine phosphatase -
  CAB17_RS08955 (CAB17_15605) - 2024896..2025438 (+) 543 WP_101900850.1 pseudouridine synthase -
  CAB17_RS08960 (CAB17_15610) mreD 2025562..2026041 (-) 480 WP_101900851.1 rod shape-determining protein MreD -
  CAB17_RS08965 (CAB17_15615) mreC 2026041..2026946 (-) 906 WP_101900852.1 rod shape-determining protein MreC -
  CAB17_RS08970 (CAB17_15620) - 2026924..2027961 (-) 1038 WP_003636696.1 rod shape-determining protein -
  CAB17_RS08975 (CAB17_15625) comEA 2028134..2028463 (-) 330 WP_101900853.1 ComEA family DNA-binding protein Machinery gene
  CAB17_RS08985 (CAB17_15630) - 2028665..2030074 (-) 1410 WP_101900854.1 M20 family metallopeptidase -
  CAB17_RS08990 (CAB17_15635) - 2030049..2031140 (-) 1092 WP_101900855.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  CAB17_RS08995 (CAB17_15640) nadC 2031137..2031979 (-) 843 WP_101900856.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CAB17_RS09000 (CAB17_15645) - 2031972..2033414 (-) 1443 WP_174714460.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11930.08 Da        Isoelectric Point: 10.1702

>NTDB_id=261992 CAB17_RS08975 WP_101900853.1 2028134..2028463(-) (comEA) [Legionella sainthelensi strain LA01-117]
MKAKCIAVVLSLFVITLPVHATLAKQDSAPKPPPIVVDKIDLNKADLATLTGSIKGIGKKRAEAIIAYRQSHHGFKSLEE
LSDVKGIGQHFVNVNREKLSEVFVIQKME

Nucleotide


Download         Length: 330 bp        

>NTDB_id=261992 CAB17_RS08975 WP_101900853.1 2028134..2028463(-) (comEA) [Legionella sainthelensi strain LA01-117]
ATGAAAGCAAAATGTATTGCTGTTGTATTATCATTATTTGTTATTACCCTTCCTGTGCATGCCACTCTTGCTAAACAGGA
CTCTGCCCCAAAGCCACCTCCGATAGTAGTTGATAAAATAGATCTCAATAAAGCAGATTTGGCTACCCTAACTGGTTCTA
TTAAAGGTATAGGAAAGAAACGAGCTGAAGCCATTATTGCTTATCGCCAAAGCCATCACGGCTTTAAGTCTCTTGAAGAG
CTCTCTGATGTGAAGGGCATAGGACAGCATTTTGTAAATGTGAATCGTGAAAAGTTAAGTGAAGTATTTGTTATTCAAAA
AATGGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(39-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H5FP90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

60.952

96.33

0.587
  comEA Legionella pneumophila strain ERS1305867

60.952

96.33

0.587

Multiple sequence alignment