Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CPR_RS12155 Genome accession   NC_008262
Coordinates   2647678..2649039 (-) Length   453 a.a.
NCBI ID   WP_011593151.1    Uniprot ID   Q0SQB5
Organism   Clostridium perfringens SM101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2642678..2654039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPR_RS12135 (CPR_2426) ispD 2644050..2644727 (-) 678 WP_011593147.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CPR_RS12140 (CPR_2427) - 2644741..2645847 (-) 1107 WP_011593148.1 PIN/TRAM domain-containing protein -
  CPR_RS12145 (CPR_2428) - 2646159..2646560 (+) 402 WP_011593149.1 hypothetical protein -
  CPR_RS12150 (CPR_2429) disA 2646594..2647658 (-) 1065 WP_011593150.1 DNA integrity scanning diadenylate cyclase DisA -
  CPR_RS12155 (CPR_2430) radA 2647678..2649039 (-) 1362 WP_011593151.1 DNA repair protein RadA Machinery gene
  CPR_RS12160 (CPR_2431) nagB 2649289..2650017 (-) 729 WP_011593152.1 glucosamine-6-phosphate deaminase -
  CPR_RS12165 (CPR_2432) - 2650014..2650736 (-) 723 WP_011593153.1 GntR family transcriptional regulator -
  CPR_RS13650 - 2650936..2651100 (+) 165 WP_164801785.1 hypothetical protein -
  CPR_RS12170 (CPR_2433) - 2651194..2651421 (+) 228 WP_011593154.1 glutaredoxin family protein -
  CPR_RS12175 (CPR_2434) - 2651544..2652992 (-) 1449 WP_011593155.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  CPR_RS12180 (CPR_2435) - 2653009..2653242 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49815.51 Da        Isoelectric Point: 7.0588

>NTDB_id=26197 CPR_RS12155 WP_011593151.1 2647678..2649039(-) (radA) [Clostridium perfringens SM101]
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDAKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLIQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAARLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFSNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=26197 CPR_RS12155 WP_011593151.1 2647678..2649039(-) (radA) [Clostridium perfringens SM101]
GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAATGGATGGGTAAATGTCCAGAATG
TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATGCTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG
GTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA
TTAGGTGGAGGGCTTGTTAAGGGATCGCTTACACTTATATCTGGTGACCCTGGAATAGGTAAATCTACACTTCTTTTACA
AACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGAGAAGAATCAGAAGAACAAATAAAAATAA
GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA
GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAACAGTTTCTTCAGCACCAGGAAG
TGTTTCACAGGTTAAAGAATGCTCAAACGCTGTAATGAGAATTGCTAAAGGAAAAAATATTCCTTTATTTATAGTTGCTC
ATGTTACTAAGCAAGGAGATTTAGCTGGACCAAGAGTATTAGAACACATGGTGGATACAGTATTATCCTTTGAAGGGGAA
AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGCTGAAATAGGTGTTTTTGAAATGCG
TGGAGAGGGATTAATTCAGGTTTATGATCCATCTAGCATGTTCTTAGAGGACACTAGTTTTAATCAAGAAGGGTCAGTTG
TAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT
AGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAGAAATTAAGAGTTCCTTT
TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGACTTAGGAATTGCCATTT
CACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGATTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA
ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTCAAATGCAGTTGTTCCTTATAG
AAGTTTAGAAAAACTAAAGGGAAGTAAATTAAATCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0SQB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.331

100

0.503
  radA Streptococcus pneumoniae Rx1

47.797

100

0.479
  radA Streptococcus pneumoniae D39

47.797

100

0.479
  radA Streptococcus pneumoniae R6

47.797

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.797

100

0.479
  radA Streptococcus mitis NCTC 12261

47.577

100

0.477
  radA Streptococcus mitis SK321

47.577

100

0.477

Multiple sequence alignment