Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   CYK59_RS06845 Genome accession   NZ_CP025476
Coordinates   1307969..1308970 (-) Length   333 a.a.
NCBI ID   WP_076786758.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain IRG2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1302969..1313970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK59_RS06810 (CYK59_06835) - 1303334..1303786 (-) 453 WP_056967146.1 hypothetical protein -
  CYK59_RS06815 (CYK59_06840) - 1303846..1305039 (-) 1194 WP_004270911.1 acetate/propionate family kinase -
  CYK59_RS06820 (CYK59_06845) - 1305061..1306071 (-) 1011 WP_054644024.1 class I SAM-dependent methyltransferase -
  CYK59_RS06825 (CYK59_06850) - 1306196..1306519 (-) 324 WP_039099486.1 hypothetical protein -
  CYK59_RS06830 (CYK59_06855) - 1306497..1306877 (-) 381 WP_004270914.1 ComGF family competence protein -
  CYK59_RS10660 - 1306899..1306982 (-) 84 Protein_1313 type II secretion system protein -
  CYK59_RS10280 - 1306948..1307253 (-) 306 WP_039099485.1 hypothetical protein -
  CYK59_RS06835 (CYK59_06860) - 1307240..1307683 (-) 444 WP_039099484.1 type II secretion system protein -
  CYK59_RS06840 (CYK59_06865) comGC 1307664..1307972 (-) 309 WP_004270901.1 competence type IV pilus major pilin ComGC Machinery gene
  CYK59_RS06845 (CYK59_06870) comGB 1307969..1308970 (-) 1002 WP_076786758.1 type II secretion system F family protein Machinery gene
  CYK59_RS06850 (CYK59_06875) comGA 1308960..1309835 (-) 876 WP_126133420.1 competence type IV pilus ATPase ComGA Machinery gene
  CYK59_RS06855 (CYK59_06880) - 1309939..1310670 (-) 732 WP_004270897.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CYK59_RS06860 (CYK59_06885) - 1310760..1311260 (-) 501 WP_004270893.1 VanZ family protein -
  CYK59_RS06865 (CYK59_06890) - 1311363..1311740 (+) 378 WP_039099519.1 hypothetical protein -
  CYK59_RS06875 (CYK59_06900) - 1311921..1312256 (-) 336 WP_076786752.1 hypothetical protein -
  CYK59_RS06880 (CYK59_06905) - 1312451..1312690 (+) 240 WP_004270892.1 cytochrome b5 domain-containing protein -
  CYK59_RS06885 (CYK59_06910) tnpA 1312817..1313128 (-) 312 Protein_1324 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37893.09 Da        Isoelectric Point: 9.6278

>NTDB_id=261909 CYK59_RS06845 WP_076786758.1 1307969..1308970(-) (comGB) [Latilactobacillus curvatus strain IRG2]
MKTKTTVQFNTEFMLLLGRLLQNGFSLQQALEFMPIVFPTQKQWLHQVQTGLEAGKRLAPSLAAVSFPAHLVAQIELTEL
QGNLGECLLHLGQLQRIQQKRRRELVGVIAYPCFLLLFLGALIGMMQIYLFPEIAQFNPTTSATSPLQLFFRVMGTFVIM
AGALISVYFFRWHRRPLLQRLAAAFRWPFIGKTLQAYYQYCLLFDLATCLNNGLNLAEMHQLTHRLAKTSWLVQLMQQLE
TAVQKGGTLLANLADGVFYPPELQLVLAKGSPLQQMAKEVDLLAVIKYDELQRQLKQKVNWLQPLLFILIGIIIICTYLS
ILLPLYHTMEGIS

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=261909 CYK59_RS06845 WP_076786758.1 1307969..1308970(-) (comGB) [Latilactobacillus curvatus strain IRG2]
ATGAAGACTAAAACCACTGTTCAATTCAATACTGAATTTATGTTGCTGTTAGGTCGCTTACTGCAAAATGGTTTTTCTTT
ACAACAAGCACTTGAGTTCATGCCGATTGTTTTTCCGACGCAAAAGCAGTGGCTGCATCAGGTGCAAACTGGGTTAGAAG
CAGGAAAACGACTAGCACCAAGCTTAGCGGCGGTTTCGTTTCCAGCACACCTTGTTGCACAGATTGAATTGACTGAGTTG
CAGGGAAACTTAGGCGAGTGTTTGTTACATCTTGGCCAATTACAGCGAATTCAACAGAAACGGCGTAGAGAGTTAGTTGG
CGTAATTGCCTATCCCTGTTTTCTACTCCTTTTTCTCGGGGCGTTGATTGGGATGATGCAGATTTATCTTTTTCCGGAAA
TCGCGCAGTTTAACCCAACAACTTCGGCGACATCACCATTACAACTATTTTTTAGAGTGATGGGGACATTCGTTATTATG
GCTGGTGCTCTGATTAGTGTGTATTTTTTCCGTTGGCATCGGCGACCGCTATTACAACGATTGGCGGCGGCATTTAGATG
GCCGTTCATCGGTAAAACGTTGCAGGCTTACTATCAGTATTGTTTATTATTTGATTTAGCGACTTGCCTGAATAACGGCT
TAAACTTGGCCGAAATGCATCAGCTTACACATCGTTTGGCGAAAACATCGTGGCTTGTACAATTAATGCAACAACTTGAA
ACGGCTGTCCAAAAAGGGGGCACGCTATTGGCGAACTTAGCGGATGGCGTTTTTTATCCACCTGAGCTGCAATTAGTGCT
CGCTAAGGGAAGTCCGTTACAACAGATGGCCAAGGAGGTTGATCTGCTTGCAGTCATTAAATACGATGAACTGCAACGGC
AATTGAAACAGAAGGTGAATTGGCTACAACCGCTCTTGTTTATCCTAATTGGGATCATCATTATTTGTACCTATCTCAGT
ATTTTATTACCGCTATATCATACAATGGAGGGAATTTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(13-132)

Type II secretion system (T2SS), protein F (T2SSF)

(205-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Latilactobacillus sakei subsp. sakei 23K

56.677

100

0.574

Multiple sequence alignment