Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CYK59_RS01785 Genome accession   NZ_CP025476
Coordinates   321142..322506 (+) Length   454 a.a.
NCBI ID   WP_126133158.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain IRG2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 316142..327506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK59_RS01765 (CYK59_01755) - 316396..317742 (-) 1347 WP_056967168.1 C1 family peptidase -
  CYK59_RS01770 (CYK59_01760) - 318050..319372 (-) 1323 WP_004265029.1 aminopeptidase C -
  CYK59_RS01775 (CYK59_01765) rpiA 319660..320343 (-) 684 WP_039098344.1 ribose-5-phosphate isomerase RpiA -
  CYK59_RS01780 (CYK59_01770) - 320524..321063 (+) 540 WP_126133157.1 dUTP diphosphatase -
  CYK59_RS01785 (CYK59_01775) radA 321142..322506 (+) 1365 WP_126133158.1 DNA repair protein RadA Machinery gene
  CYK59_RS01790 (CYK59_01780) - 322537..323649 (+) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -
  CYK59_RS01795 (CYK59_01785) cysS 324195..325601 (+) 1407 WP_126133159.1 cysteine--tRNA ligase -
  CYK59_RS01800 (CYK59_01790) - 325598..326005 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  CYK59_RS01805 (CYK59_01795) rlmB 325992..326879 (+) 888 WP_004265172.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CYK59_RS01810 (CYK59_01800) - 326883..327416 (+) 534 WP_004265051.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49722.18 Da        Isoelectric Point: 7.3493

>NTDB_id=261888 CYK59_RS01785 WP_126133158.1 321142..322506(+) (radA) [Latilactobacillus curvatus strain IRG2]
MAKIKTQFVCQNCGYSSPRFLGRCPNCGAWNQMVEEREQPAASAKSSFTISGRATEPEQISTVNIQKEPRIKTELNELNR
VLGGGVVPGSLILIGGDPGIGKSTLLLQVSGQLEKVGKILYVSGEESVSQIKMRANRLDVNGDQLYLYPETDMGKIRHQI
ETMKPDFVVIDSIQTMSEPEVTSAVGSVSQVRQVTAELMRIAKTNQITIFVVGHVTKEGAIAGPKILEHMVDTVLYFEGD
THHTYRILRSVKNRFGSTNEIGIFEMREAGLKEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVELQTLITPTLFGNA
KRTSSGLDHNRVSLIMAVLEKRASLMLSNQDAYLKATGGVKLDEPAIDLAMAVSIASSYRDKEIPPTDCFVGEIGLTGEI
RRVNRIEQRVSEAAKLGFKRIYVPKNNLQGWDAPTDIQVIGVTTIAETLKKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=261888 CYK59_RS01785 WP_126133158.1 321142..322506(+) (radA) [Latilactobacillus curvatus strain IRG2]
GTGGCTAAAATTAAGACTCAGTTTGTTTGCCAAAATTGTGGCTATAGTTCCCCGAGATTCTTAGGTCGGTGCCCGAATTG
TGGCGCTTGGAACCAAATGGTCGAAGAACGTGAACAACCTGCAGCTAGCGCGAAATCAAGTTTTACGATTTCAGGGCGGG
CAACTGAACCAGAACAAATCAGCACCGTTAATATTCAAAAGGAACCGCGTATTAAAACTGAATTAAACGAACTCAACCGC
GTGCTTGGCGGTGGAGTGGTACCGGGCTCATTGATTCTAATTGGTGGGGATCCTGGGATTGGGAAATCAACGTTACTCCT
ACAAGTTTCCGGACAACTTGAAAAGGTTGGTAAGATTCTTTATGTTTCTGGTGAAGAAAGTGTATCCCAGATTAAGATGC
GGGCTAACCGGCTTGATGTGAATGGCGATCAACTTTACTTATATCCTGAAACGGATATGGGCAAGATTCGGCATCAGATT
GAAACAATGAAACCCGACTTTGTGGTGATTGATTCAATTCAAACGATGAGCGAACCAGAAGTGACTTCCGCAGTCGGTAG
TGTTTCACAAGTGCGTCAAGTCACCGCTGAATTGATGCGCATTGCGAAGACGAACCAGATTACGATTTTTGTGGTTGGGC
ATGTCACTAAAGAGGGCGCTATTGCCGGTCCTAAGATTTTGGAGCACATGGTAGATACTGTATTGTACTTTGAAGGGGAT
ACGCATCATACTTACCGCATTCTTCGCTCGGTTAAGAACCGGTTTGGTTCAACCAATGAGATTGGGATTTTCGAAATGCG
TGAAGCCGGCTTAAAAGAGGTCGCGAACCCATCCGAGATTTTCCTAGAAGAACGTTTGGCAGGGGCGACAGGTTCAGCCG
TGGTTGTTTCGATGGAAGGCACGCGGCCGATTTTGGTCGAGTTACAGACCCTAATTACCCCAACACTATTCGGGAATGCA
AAGCGCACGTCTTCAGGGTTAGATCATAATCGGGTCTCCTTGATTATGGCGGTGCTCGAAAAGCGTGCTAGTCTCATGCT
ATCGAACCAAGATGCGTATTTAAAAGCAACTGGCGGTGTTAAATTAGATGAACCTGCGATTGATTTGGCGATGGCTGTTT
CGATTGCATCAAGCTATCGGGATAAAGAAATCCCACCAACTGATTGTTTCGTTGGTGAAATCGGCCTGACTGGTGAAATT
CGCCGGGTCAACCGGATTGAACAACGCGTCAGTGAAGCTGCTAAATTAGGCTTTAAACGTATTTATGTACCAAAGAATAA
CTTACAAGGGTGGGACGCACCGACGGATATCCAAGTGATTGGTGTGACCACGATTGCAGAAACTTTAAAGAAAGTATTCA
ACTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

69.095

99.78

0.689
  radA Streptococcus pneumoniae Rx1

69.095

99.78

0.689
  radA Streptococcus pneumoniae D39

69.095

99.78

0.689
  radA Streptococcus pneumoniae R6

69.095

99.78

0.689
  radA Streptococcus pneumoniae TIGR4

69.095

99.78

0.689
  radA Streptococcus mitis NCTC 12261

69.095

99.78

0.689
  radA Bacillus subtilis subsp. subtilis str. 168

65.563

99.78

0.654

Multiple sequence alignment