Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   CYK58_RS07380 Genome accession   NZ_CP025474
Coordinates   1514431..1515744 (-) Length   437 a.a.
NCBI ID   WP_164543860.1    Uniprot ID   -
Organism   Helicobacter pylori strain H-137     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509431..1520744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK58_RS07350 (CYK58_07345) nadC 1509894..1510715 (-) 822 WP_126131530.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CYK58_RS07355 (CYK58_07350) nadA 1510715..1511725 (-) 1011 WP_126131531.1 quinolinate synthase NadA -
  CYK58_RS07360 (CYK58_07355) - 1511715..1512518 (-) 804 WP_126131532.1 phosphatidylserine decarboxylase -
  CYK58_RS07365 (CYK58_07360) - 1512515..1513018 (-) 504 WP_121278961.1 helix-turn-helix domain-containing protein -
  CYK58_RS07370 (CYK58_07365) - 1513031..1513525 (-) 495 WP_014726917.1 hypothetical protein -
  CYK58_RS07375 (CYK58_07370) mqnP 1513518..1514402 (-) 885 WP_126131533.1 menaquinone biosynthesis prenyltransferase MqnP -
  CYK58_RS07380 (CYK58_07375) comEC/comE3 1514431..1515744 (-) 1314 WP_164543860.1 ComEC/Rec2 family competence protein Machinery gene
  CYK58_RS07385 (CYK58_07380) - 1515741..1517207 (-) 1467 WP_126131534.1 replicative DNA helicase -
  CYK58_RS07390 (CYK58_07385) - 1517218..1518612 (-) 1395 WP_126131535.1 NAD(P)H-hydrate dehydratase -
  CYK58_RS07395 (CYK58_07390) crdS 1518615..1519817 (-) 1203 WP_126131536.1 copper-sensing histidine kinase CrdS -
  CYK58_RS07400 (CYK58_07395) crdR 1519783..1520424 (-) 642 WP_075711046.1 copper response regulator transcription factor CrdR -
  CYK58_RS07405 (CYK58_07400) - 1520512..1520736 (-) 225 Protein_1411 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50078.05 Da        Isoelectric Point: 9.8315

>NTDB_id=261876 CYK58_RS07380 WP_164543860.1 1514431..1515744(-) (comEC/comE3) [Helicobacter pylori strain H-137]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLILNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVYSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=261876 CYK58_RS07380 WP_164543860.1 1514431..1515744(-) (comEC/comE3) [Helicobacter pylori strain H-137]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAATACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTATTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTATTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment