Detailed information NTG0261867

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: CYK58_RS03715
• Genome accession: NZ_CP025474
• Coordinates: 772138..773340 (-)
• Length: 400 a.a.
• NCBI ID: WP_126131098.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain H-137
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 767138..778340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CYK58_RS03690 (CYK58_03685)	-	767149..767667 (-)	519	WP_126131094.1	replication regulatory RepB family protein	-
CYK58_RS03695 (CYK58_03690)	-	767664..768608 (-)	945	WP_126131095.1	ATPase, T2SS/T4P/T4SS family	-
CYK58_RS03700 (CYK58_03695)	-	768613..768885 (-)	273	WP_000883379.1	hypothetical protein	-
CYK58_RS03705 (CYK58_03700)	-	768903..769880 (-)	978	WP_126131096.1	hypothetical protein	-
CYK58_RS03710 (CYK58_03705)	-	769893..772154 (-)	2262	WP_126131097.1	collagen-like protein	-
CYK58_RS03715 (CYK58_03710)	comB10	772138..773340 (-)	1203	WP_126131098.1	DNA type IV secretion system protein ComB10	Machinery gene
CYK58_RS03720 (CYK58_03715)	-	773337..774980 (-)	1644	WP_126131099.1	TrbG/VirB9 family P-type conjugative transfer protein	-
CYK58_RS03725 (CYK58_03720)	-	774983..776146 (-)	1164	WP_126131100.1	VirB8/TrbF family protein	-
CYK58_RS08215 (CYK58_03725)	-	776139..776273 (-)	135	WP_041200005.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44736.40 Da
• Isoelectric Point: 10.0509

>NTDB_id=261867 CYK58_RS03715 WP_126131098.1 772138..773340(-) (comB10) [Helicobacter pylori strain H-137]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIFQVNESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDVFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=261867 CYK58_RS03715 WP_126131098.1 772138..773340(-) (comB10) [Helicobacter pylori strain H-137]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAATGAGAGTAAATTCCCACTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATGTTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATTGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACACCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.181	98.25	0.523