Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   CYK58_RS00010 Genome accession   NZ_CP025474
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_126130668.1    Uniprot ID   -
Organism   Helicobacter pylori strain H-137     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK58_RS00005 (CYK58_00005) dnaA 1..1368 (+) 1368 WP_126130667.1 chromosomal replication initiator protein DnaA -
  CYK58_RS00010 (CYK58_00010) comH 1589..3028 (+) 1440 WP_126130668.1 competence protein Machinery gene
  CYK58_RS00020 (CYK58_00020) - 3206..3958 (+) 753 WP_126130669.1 exodeoxyribonuclease III -
  CYK58_RS00025 (CYK58_00025) - 3955..4590 (-) 636 WP_126130670.1 outer membrane protein -
  CYK58_RS00030 (CYK58_00030) - 4594..4947 (-) 354 WP_126130671.1 hypothetical protein -
  CYK58_RS00035 (CYK58_00035) recG 5029..6894 (+) 1866 WP_126130672.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 55003.10 Da        Isoelectric Point: 7.0432

>NTDB_id=261858 CYK58_RS00010 WP_126130668.1 1589..3028(+) (comH) [Helicobacter pylori strain H-137]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKELHPHQMPSLNAPIQKPRNKPTSSQQSLQNFSYPESKLGSKNPKNSLLQPL
AIPNKTSSANEVKTPTNDTKPPLKHFSEDQENNLFIAPPTEKTLPNNTPNADINEHNESNENRDSVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=261858 CYK58_RS00010 WP_126130668.1 1589..3028(+) (comH) [Helicobacter pylori strain H-137]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATCCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTTGCACCCACACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACGAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTTCTTATCCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCATTCCTAATAAAACAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTTTTC
AGAAGATCAAGAAAACAACCTCTTTATAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTGATATTA
ATGAACACAATGAAAGCAATGAGAATAGGGATAGTGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAACCTTT
AAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

93.111

100

0.931

Multiple sequence alignment