Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CYK55_RS04145 Genome accession   NZ_CP025473
Coordinates   802262..803941 (+) Length   559 a.a.
NCBI ID   WP_034689867.1    Uniprot ID   -
Organism   Enterococcus mundtii strain Pe161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 797262..808941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK55_RS04115 (CYK55_04135) - 797561..798415 (+) 855 WP_034689878.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  CYK55_RS04120 (CYK55_04140) xseA 798412..799752 (+) 1341 WP_034689876.1 exodeoxyribonuclease VII large subunit -
  CYK55_RS04125 (CYK55_04145) - 799754..799981 (+) 228 WP_034689874.1 exodeoxyribonuclease VII small subunit -
  CYK55_RS04130 (CYK55_04150) - 799978..800865 (+) 888 WP_034689871.1 polyprenyl synthetase family protein -
  CYK55_RS04135 (CYK55_04155) - 800874..801695 (+) 822 WP_126133982.1 TlyA family RNA methyltransferase -
  CYK55_RS04140 (CYK55_04160) - 801795..802244 (+) 450 WP_010735995.1 arginine repressor -
  CYK55_RS04145 (CYK55_04165) recN 802262..803941 (+) 1680 WP_034689867.1 DNA repair protein RecN Machinery gene
  CYK55_RS04150 (CYK55_04170) - 804503..804778 (+) 276 WP_034689865.1 hypothetical protein -
  CYK55_RS04155 (CYK55_04175) - 804885..805964 (+) 1080 WP_126133983.1 hypothetical protein -
  CYK55_RS04160 (CYK55_04180) - 806222..806338 (-) 117 WP_010735989.1 DUF4044 domain-containing protein -
  CYK55_RS04165 (CYK55_04185) - 806410..807366 (-) 957 WP_010735988.1 magnesium transporter CorA family protein -
  CYK55_RS04170 (CYK55_04190) - 807576..807944 (+) 369 WP_010735987.1 DUF3397 domain-containing protein -
  CYK55_RS04175 (CYK55_04195) mraZ 808115..808546 (+) 432 WP_034689889.1 division/cell wall cluster transcriptional repressor MraZ -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62798.81 Da        Isoelectric Point: 4.4614

>NTDB_id=261835 CYK55_RS04145 WP_034689867.1 802262..803941(+) (recN) [Enterococcus mundtii strain Pe161]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFEWPKQEGFEALM
EELGIESDGSNLIVRRDMSLAGKNVCRVNGHIVTLANLRRVGSYLVDIQGQNEHQELLQPESHLVLLDRFGDSTFQQKKR
AYQEAYQAYRELERKVRKIQQNEKNYVQRIDMLNFQQEEIAAAQLEVGEEEKLREERDKLSNYQKIVDGLATAYGALSEG
EQSSLDGVGTAVSEIQSIAHLDSEYEAIFDNIQSAYYLLQDAVGDMSRQIDLLELDENRLEEVTQRMETIRQLKRKYGDS
VEAILAYYEEITEELDSSDFTEGQLDKMKNELTQKEEWAFQCAEELHQARKTIASDLEQSIMRELKSLYMENTEFEVRFS
TQANGRLDEQGFDIVEFYITTNPGEPLKPLVKVASGGELSRVLLALKTIFSSGQGVTSIIFDEVDTGVSGRVAQAIADKI
LKISKYSQVLCITHLPQVAAVADYQYYIVKEVVGGRTQTSVSELAAAERENEIARMLAGSEITPLTIEHAKELLRLAKK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=261835 CYK55_RS04145 WP_034689867.1 802262..803941(+) (recN) [Enterococcus mundtii strain Pe161]
ATGCTACAAGAAATCAGTATCACCAATTTTGCGATTATTCCTGAATTGCGTTTGTCGTTTCATGAGGGAATGACAGCATT
AACAGGAGAAACCGGAGCCGGTAAGTCAATTATTATTGATGCTTTGGGCTTATTAGCAGGTGGTCGCGGATCAAGTGATT
ATATTCGTCAAGGTGCCGATAAATGTATTCTGGAAGGGTTGTTTGAATGGCCTAAACAAGAAGGTTTTGAAGCTTTGATG
GAAGAGTTAGGGATTGAGTCCGATGGTTCAAATCTGATCGTCCGTCGAGATATGTCTTTAGCAGGTAAGAATGTTTGTCG
AGTGAATGGACATATCGTGACATTAGCGAATTTGCGACGCGTAGGTAGTTATTTAGTGGATATCCAAGGTCAAAATGAAC
ATCAGGAACTATTACAACCTGAATCACATCTTGTGTTACTTGATCGTTTTGGGGACTCGACATTCCAACAGAAAAAAAGA
GCGTACCAAGAAGCCTATCAAGCGTATCGTGAACTTGAAAGAAAAGTGCGTAAAATCCAACAAAACGAAAAAAACTATGT
CCAACGTATCGATATGTTGAATTTCCAACAAGAAGAAATCGCAGCTGCCCAATTAGAAGTTGGTGAAGAAGAAAAACTTC
GAGAAGAGCGCGATAAATTAAGTAATTATCAAAAAATCGTTGATGGTTTAGCTACTGCTTATGGGGCGCTTAGTGAAGGC
GAACAAAGCAGTCTTGATGGGGTGGGAACGGCTGTTTCCGAGATCCAAAGTATTGCCCATCTTGATTCAGAGTATGAAGC
AATTTTTGATAATATCCAGAGTGCCTATTATTTATTGCAAGATGCAGTAGGGGACATGAGTAGACAAATCGATCTGCTTG
AACTGGATGAGAATCGTTTGGAAGAAGTGACGCAACGCATGGAAACGATTCGTCAATTGAAGCGTAAATATGGCGATTCA
GTTGAAGCTATATTAGCCTACTATGAAGAAATCACAGAAGAATTGGATTCATCTGATTTTACAGAAGGTCAACTTGATAA
AATGAAGAATGAACTGACCCAAAAAGAAGAGTGGGCGTTTCAATGTGCAGAAGAACTCCATCAAGCAAGAAAAACGATCG
CAAGTGACTTAGAACAGTCGATTATGCGTGAATTAAAGAGTCTTTATATGGAAAACACCGAATTTGAAGTTCGTTTTTCA
ACGCAAGCAAATGGACGCTTAGATGAGCAAGGTTTTGATATCGTTGAATTTTATATTACGACAAATCCAGGAGAACCATT
GAAGCCTCTAGTCAAGGTAGCATCAGGTGGAGAATTGTCACGAGTATTACTTGCTCTGAAAACCATTTTTTCTTCTGGAC
AAGGTGTGACTAGTATCATTTTTGACGAAGTTGATACTGGTGTTAGTGGCAGAGTGGCACAAGCCATTGCGGATAAGATA
TTGAAAATATCCAAGTATTCCCAAGTACTTTGTATCACGCATCTCCCTCAAGTGGCTGCGGTAGCGGATTATCAATATTA
CATTGTAAAAGAAGTCGTCGGCGGAAGAACACAAACATCCGTCTCCGAATTAGCCGCAGCTGAAAGAGAAAATGAAATAG
CACGAATGTTAGCGGGAAGTGAAATCACGCCTTTAACGATCGAACACGCCAAAGAGTTGTTACGTTTGGCGAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.526

100

0.515

Multiple sequence alignment