Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DR994_RS08105 Genome accession   NZ_CP030927
Coordinates   1577274..1578005 (-) Length   243 a.a.
NCBI ID   WP_002948813.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS9     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572274..1583005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS10125 (DR994_08305) - 1572305..1572660 (-) 356 Protein_1567 DUF805 domain-containing protein -
  DR994_RS08090 (DR994_08315) - 1573505..1574755 (-) 1251 WP_173940648.1 glutamate-5-semialdehyde dehydrogenase -
  DR994_RS08095 (DR994_08320) proB 1574757..1575560 (-) 804 WP_002948808.1 glutamate 5-kinase -
  DR994_RS08100 (DR994_08325) - 1575681..1577271 (-) 1591 Protein_1570 ABC transporter permease -
  DR994_RS08105 (DR994_08330) pptA 1577274..1578005 (-) 732 WP_002948813.1 ABC transporter ATP-binding protein Regulator
  DR994_RS08110 (DR994_08335) - 1578278..1579011 (+) 734 Protein_1572 DUF554 domain-containing protein -
  DR994_RS08115 (DR994_08340) - 1579385..1580736 (+) 1352 WP_096811962.1 IS3 family transposase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27692.52 Da        Isoelectric Point: 4.8191

>NTDB_id=261816 DR994_RS08105 WP_002948813.1 1577274..1578005(-) (pptA) [Streptococcus thermophilus strain CS9]
MIRFEHVTKRYENKDALSDLNLEIRDGEILGLISHNGAGKTTTISILTSIIEASYGEVYVDDMALSQHRDAIKKKIAYVP
DSPDLFLNLTANDYWYFLTRIYDLEASQVEERLTDLMSTFDLTENRYNLISSFSHGMRQKVVVIDAFLVNPQIWILDEPL
TGLDPQASYDLKEAMRNHAKEGNSVLFSTHVLSVAEQICDRIGILKKGKLIFQGSIAELKHQYPDKDLETIYLEMAGRKA
EEV

Nucleotide


Download         Length: 732 bp        

>NTDB_id=261816 DR994_RS08105 WP_002948813.1 1577274..1578005(-) (pptA) [Streptococcus thermophilus strain CS9]
ATGATTCGTTTTGAACATGTAACGAAACGTTATGAAAATAAGGATGCTCTCTCAGATCTTAATCTCGAGATTCGAGACGG
TGAAATCCTTGGTTTGATTAGTCACAATGGAGCTGGTAAAACCACTACCATTTCCATTTTGACGTCTATTATTGAAGCTA
GTTATGGAGAGGTTTACGTCGATGATATGGCCCTCAGTCAGCATCGTGATGCTATTAAGAAGAAAATAGCATATGTGCCA
GATTCACCGGACTTATTTCTAAATTTGACTGCCAATGATTACTGGTACTTTTTGACACGTATCTATGATTTGGAAGCTAG
TCAGGTTGAGGAACGTTTGACTGATCTCATGTCTACCTTTGACTTGACTGAGAATCGCTATAATCTCATTTCATCCTTCT
CTCATGGTATGCGTCAGAAGGTTGTTGTTATCGATGCTTTTCTGGTTAATCCACAGATTTGGATTTTAGATGAGCCTTTG
ACTGGTCTGGACCCACAGGCATCTTATGATTTGAAAGAAGCTATGCGTAACCATGCTAAGGAGGGCAATAGTGTGCTCTT
CTCAACCCACGTTTTAAGTGTAGCTGAACAGATCTGTGATCGCATCGGTATTTTGAAGAAAGGAAAACTCATCTTCCAAG
GGTCTATAGCTGAACTTAAGCATCAGTACCCTGACAAGGATTTGGAAACCATTTATCTAGAAATGGCTGGACGTAAGGCC
GAGGAGGTGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

37.975

97.531

0.37
  pptA Streptococcus salivarius strain HSISS4

37.131

97.531

0.362