Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CPT07_RS19495 Genome accession   NZ_CP030919
Coordinates   3703137..3703805 (-) Length   222 a.a.
NCBI ID   WP_001295236.1    Uniprot ID   -
Organism   Escherichia coli strain KL53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3698137..3708805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPT07_RS19465 (CPT07_19465) rfaQ 3698315..3699373 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CPT07_RS19470 (CPT07_19470) waaA 3699786..3701063 (+) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CPT07_RS19475 (CPT07_19475) coaD 3701071..3701550 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CPT07_RS19480 (CPT07_19480) mutM 3701589..3702398 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CPT07_RS19485 (CPT07_19485) rpmG 3702496..3702663 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CPT07_RS19490 (CPT07_19490) rpmB 3702684..3702920 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CPT07_RS19495 (CPT07_19495) radC 3703137..3703805 (-) 669 WP_001295236.1 DNA repair protein RadC Machinery gene
  CPT07_RS19500 (CPT07_19500) coaBC 3703977..3705197 (+) 1221 WP_000050109.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CPT07_RS19505 (CPT07_19505) dut 3705175..3705633 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CPT07_RS19510 (CPT07_19510) slmA 3705740..3706336 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CPT07_RS19515 (CPT07_19515) pyrE 3706373..3707014 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CPT07_RS19520 (CPT07_19520) rph 3707080..3707796 (-) 717 WP_001247089.1 ribonuclease PH -
  CPT07_RS19530 (CPT07_19530) yicC 3707923..3708786 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25200.31 Da        Isoelectric Point: 8.4958

>NTDB_id=261713 CPT07_RS19495 WP_001295236.1 3703137..3703805(-) (radC) [Escherichia coli strain KL53]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMRAESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=261713 CPT07_RS19495 WP_001295236.1 3703137..3703805(-) (radC) [Escherichia coli strain KL53]
GTGAAAAATAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGCAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496