Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CPT07_RS14285 Genome accession   NZ_CP030919
Coordinates   2706712..2707200 (-) Length   162 a.a.
NCBI ID   WP_045146589.1    Uniprot ID   A0ABV1ZFN6
Organism   Escherichia coli strain KL53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2701712..2712200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPT07_RS14250 (CPT07_14250) - 2702003..2702878 (-) 876 WP_032333274.1 hypothetical protein -
  CPT07_RS14255 (CPT07_14255) - 2702880..2703074 (-) 195 WP_032333275.1 AlpA family transcriptional regulator -
  CPT07_RS14260 (CPT07_14260) - 2703267..2703761 (+) 495 WP_063857557.1 hypothetical protein -
  CPT07_RS14265 (CPT07_14265) - 2703996..2704943 (-) 948 WP_032333276.1 site-specific integrase -
  CPT07_RS28370 - 2705038..2705202 (-) 165 WP_232248709.1 DUF905 family protein -
  CPT07_RS28375 - 2705299..2705655 (-) 357 Protein_2627 TA system toxin CbtA family protein -
  CPT07_RS14275 (CPT07_14275) - 2705765..2706130 (-) 366 WP_032333278.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CPT07_RS14280 (CPT07_14280) - 2706193..2706624 (-) 432 WP_032333279.1 DUF2787 family protein -
  CPT07_RS14285 (CPT07_14285) radC 2706712..2707200 (-) 489 WP_045146589.1 DNA repair protein RadC Machinery gene
  CPT07_RS14290 (CPT07_14290) - 2707223..2707765 (-) 543 WP_000174655.1 hypothetical protein -
  CPT07_RS14295 (CPT07_14295) - 2707923..2708303 (-) 381 WP_032333280.1 hypothetical protein -
  CPT07_RS14300 (CPT07_14300) - 2708424..2708693 (+) 270 WP_001442951.1 helix-turn-helix domain-containing protein -
  CPT07_RS14305 (CPT07_14305) - 2708706..2709233 (+) 528 WP_000108266.1 hypothetical protein -
  CPT07_RS14310 (CPT07_14310) - 2709287..2709805 (+) 519 WP_032333282.1 hypothetical protein -
  CPT07_RS14315 (CPT07_14315) - 2709817..2710131 (+) 315 WP_032333283.1 hypothetical protein -
  CPT07_RS28630 (CPT07_14320) - 2710827..2711051 (-) 225 WP_024168661.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18353.06 Da        Isoelectric Point: 7.6495

>NTDB_id=261692 CPT07_RS14285 WP_045146589.1 2706712..2707200(-) (radC) [Escherichia coli strain KL53]
MTFIASDRSGHYQTLEPVTREQIIRFAHSLLTRQFRNRRKITSSEDVRQWLVMKLALENRESFGVIMLSQQHHILGYQTL
FTGTLSQTMVYPREIVSLALTHNAAAVILVHNHPSGEPEPSQADKLITQKITDALALLDIRVTDHLIVGGDKAWSFAEHG
LL

Nucleotide


Download         Length: 489 bp        

>NTDB_id=261692 CPT07_RS14285 WP_045146589.1 2706712..2707200(-) (radC) [Escherichia coli strain KL53]
ATGACGTTTATCGCAAGTGATCGTAGCGGTCATTATCAGACGCTGGAGCCGGTTACCCGCGAACAGATTATCCGGTTTGC
CCATTCTTTGCTGACCCGCCAGTTTCGCAATCGCCGAAAAATCACCTCATCTGAAGATGTACGTCAGTGGCTGGTGATGA
AGCTGGCGCTTGAAAACCGTGAATCTTTTGGTGTGATAATGCTTTCACAGCAACATCATATTCTCGGCTACCAGACATTG
TTTACCGGTACGCTGAGCCAGACGATGGTTTATCCCCGCGAAATAGTCAGCCTGGCACTGACGCACAACGCTGCTGCTGT
GATACTGGTGCATAACCATCCCAGTGGTGAGCCTGAACCGAGCCAGGCCGATAAACTCATTACCCAAAAAATTACAGACG
CACTGGCGTTGCTGGATATCCGCGTGACCGACCATCTCATTGTGGGAGGCGACAAAGCCTGGTCTTTCGCTGAACACGGG
TTACTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

52.459

75.309

0.395