Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CPT07_RS13995 Genome accession   NZ_CP030919
Coordinates   2650370..2650885 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain KL53     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2645370..2655885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPT07_RS13970 (CPT07_13970) ygaZ 2645769..2646506 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CPT07_RS13975 (CPT07_13975) ygaH 2646496..2646831 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  CPT07_RS13980 (CPT07_13980) emrR 2646922..2647452 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CPT07_RS13985 (CPT07_13985) emrA 2647579..2648751 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CPT07_RS13990 (CPT07_13990) emrB 2648768..2650306 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CPT07_RS13995 (CPT07_13995) luxS 2650370..2650885 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CPT07_RS14000 (CPT07_14000) gshA 2651035..2652591 (-) 1557 WP_000611812.1 glutamate--cysteine ligase -
  CPT07_RS14005 (CPT07_14005) yqaA 2652664..2653092 (-) 429 WP_085381327.1 YqaA family protein -
  CPT07_RS14010 (CPT07_14010) yqaB 2653089..2653655 (-) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CPT07_RS14040 (CPT07_14040) csrA 2655112..2655297 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=261690 CPT07_RS13995 WP_001130211.1 2650370..2650885(-) (luxS) [Escherichia coli strain KL53]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=261690 CPT07_RS13995 WP_001130211.1 2650370..2650885(-) (luxS) [Escherichia coli strain KL53]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731