Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CPT07_RS00115 Genome accession   NZ_CP030919
Coordinates   13779..14255 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli strain KL53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8779..19255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPT07_RS28465 - 10596..10724 (+) 129 WP_257394210.1 hypothetical protein -
  CPT07_RS00090 (CPT07_00090) - 10783..11061 (+) 279 WP_033801635.1 hypothetical protein -
  CPT07_RS00095 (CPT07_00095) - 11097..12311 (-) 1215 WP_033801639.1 tyrosine-type recombinase/integrase -
  CPT07_RS00100 (CPT07_00100) ykfI 12851..13192 (-) 342 WP_000854680.1 type IV toxin-antitoxin system toxin YkfI -
  CPT07_RS00105 (CPT07_00105) yafW 13213..13530 (-) 318 WP_000070396.1 type IV toxin-antitoxin system antitoxin YafW -
  CPT07_RS00110 (CPT07_00110) - 13549..13770 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  CPT07_RS00115 (CPT07_00115) radC 13779..14255 (-) 477 WP_000811693.1 RadC family protein Machinery gene
  CPT07_RS00120 (CPT07_00120) - 14271..14729 (-) 459 WP_000211838.1 antirestriction protein -
  CPT07_RS00125 (CPT07_00125) - 14827..15066 (-) 240 WP_000194654.1 DUF905 family protein -
  CPT07_RS00130 (CPT07_00130) ykfB 15143..15610 (-) 468 WP_057107658.1 protein YkfB -
  CPT07_RS00135 (CPT07_00135) - 15634..16077 (-) 444 WP_016239438.1 YfjS/YafY family lipoprotein -
  CPT07_RS00140 (CPT07_00140) ypjK 16077..16313 (-) 237 WP_057107659.1 protein YpjK -
  CPT07_RS00145 (CPT07_00145) yfjR 16354..17055 (-) 702 WP_023326104.1 WYL domain-containing protein -
  CPT07_RS00150 (CPT07_00150) yfjQ 17272..18093 (-) 822 WP_085381467.1 DUF932 domain-containing protein -
  CPT07_RS00155 (CPT07_00155) - 18185..19048 (-) 864 WP_001065555.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=261655 CPT07_RS00115 WP_000811693.1 13779..14255(-) (radC) [Escherichia coli strain KL53]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=261655 CPT07_RS00115 WP_000811693.1 13779..14255(-) (radC) [Escherichia coli strain KL53]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38