Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Y89_RS24240 Genome accession   NZ_CP030913
Coordinates   5067234..5067728 (+) Length   164 a.a.
NCBI ID   WP_003158647.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Y89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5062234..5072728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y89_RS24225 (Y89_4672) - 5062969..5063409 (+) 441 WP_003158644.1 TIGR03751 family conjugal transfer lipoprotein -
  Y89_RS24230 (Y89_4673) - 5063409..5066279 (+) 2871 WP_003158645.1 conjugative transfer ATPase -
  Y89_RS24235 (Y89_4674) - 5066295..5067047 (+) 753 WP_031299380.1 thioredoxin domain-containing protein -
  Y89_RS24240 (Y89_4675) radC 5067234..5067728 (+) 495 WP_003158647.1 DNA repair protein RadC Machinery gene
  Y89_RS24245 (Y89_4676) - 5067872..5068318 (+) 447 WP_003158648.1 TIGR03757 family integrating conjugative element protein -
  Y89_RS24250 (Y89_4677) - 5068315..5069262 (+) 948 WP_003158649.1 TIGR03756 family integrating conjugative element protein -
  Y89_RS24255 (Y89_4678) - 5069273..5070667 (+) 1395 WP_115747645.1 integrating conjugative element protein -
  Y89_RS24260 (Y89_4679) - 5070664..5071023 (+) 360 WP_003158651.1 hypothetical protein -
  Y89_RS24265 (Y89_4680) - 5071039..5072562 (+) 1524 WP_003158652.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18146.01 Da        Isoelectric Point: 5.9798

>NTDB_id=261613 Y89_RS24240 WP_003158647.1 5067234..5067728(+) (radC) [Pseudomonas aeruginosa strain Y89]
MSVVINDSCLESLSDISIQNEDWIVQQAIVLLERRVFKAGPRLERPAAVRDYLRLKLVAEPNEIFVVVFMNSMHAVLAVE
PMFHGTINATSVYPRVVLQRALQLNAAAVIFAHQHPSGTTEPSNADRLLTEQLKTALALIDVRVLDHFVIGQGAPYSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=261613 Y89_RS24240 WP_003158647.1 5067234..5067728(+) (radC) [Pseudomonas aeruginosa strain Y89]
ATGTCTGTCGTCATCAATGACTCCTGCCTGGAGTCGCTTTCCGATATTTCTATTCAGAACGAGGACTGGATCGTTCAGCA
AGCCATCGTGTTGCTGGAGCGGCGGGTTTTCAAAGCAGGGCCACGTCTTGAGCGGCCCGCAGCGGTCAGGGACTACCTTC
GTTTGAAGCTGGTCGCCGAGCCCAACGAAATATTCGTCGTCGTGTTCATGAACAGCATGCACGCCGTGCTGGCCGTGGAG
CCGATGTTCCATGGAACGATCAATGCGACCTCGGTTTATCCACGTGTCGTGCTGCAGCGAGCGTTGCAACTGAACGCCGC
TGCGGTCATCTTCGCGCATCAGCACCCCTCGGGCACCACCGAGCCATCCAATGCGGATCGGTTGCTGACCGAGCAGTTGA
AGACGGCCTTGGCGCTTATCGACGTGCGGGTACTCGACCATTTCGTGATTGGTCAAGGCGCACCGTACTCGTTCGCCGAG
TCTGGTCTTTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.781

89.024

0.372