Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Y89_RS11960 Genome accession   NZ_CP030913
Coordinates   2459187..2459696 (+) Length   169 a.a.
NCBI ID   WP_023081411.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Y89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2454187..2464696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y89_RS11940 (Y89_2308) - 2454766..2455965 (-) 1200 WP_023081414.1 tyrosine-type recombinase/integrase -
  Y89_RS11950 (Y89_2309) - 2456567..2457706 (+) 1140 WP_223719922.1 hypothetical protein -
  Y89_RS11955 (Y89_2310) - 2457978..2458574 (-) 597 WP_023081412.1 hypothetical protein -
  Y89_RS11960 (Y89_2311) radC 2459187..2459696 (+) 510 WP_023081411.1 DNA repair protein RadC Machinery gene
  Y89_RS33420 (Y89_2312) - 2459885..2461120 (-) 1236 WP_162830894.1 HEPN domain-containing protein -
  Y89_RS11965 (Y89_2313) - 2461117..2462298 (-) 1182 WP_023081409.1 hypothetical protein -
  Y89_RS11970 (Y89_2314) - 2462870..2463697 (+) 828 WP_023081408.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18774.58 Da        Isoelectric Point: 6.3312

>NTDB_id=261589 Y89_RS11960 WP_023081411.1 2459187..2459696(+) (radC) [Pseudomonas aeruginosa strain Y89]
MSQLSFSSFDSMLLVRDAQERYLPASADQILNMARRVIDQKYQRGALFSSPELVKEYLCTKLAGFEHEVFAALFLDSQHR
LLECVELFRGTIDAAAVYPREVVKEALRLNAAAVIFSHNHPSGNPEPSQADKVLTQRLKEALALVDVRTLDHIIVGGTKT
TSLAECGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=261589 Y89_RS11960 WP_023081411.1 2459187..2459696(+) (radC) [Pseudomonas aeruginosa strain Y89]
ATGTCGCAACTTTCCTTTTCCTCGTTCGATTCCATGCTGCTGGTGCGTGACGCACAGGAGCGCTACCTGCCTGCGTCTGC
AGATCAGATCCTGAACATGGCGCGTCGGGTGATCGACCAGAAATACCAGCGTGGAGCGTTGTTCTCGTCGCCGGAGCTGG
TCAAGGAGTACCTGTGCACCAAGCTGGCTGGTTTCGAGCACGAGGTGTTCGCGGCGCTGTTCCTCGACAGCCAGCATCGA
CTGCTGGAGTGCGTGGAGTTATTCCGTGGCACCATCGATGCGGCGGCGGTGTATCCGCGCGAAGTGGTGAAAGAGGCGCT
GCGGCTCAATGCAGCAGCGGTGATCTTCTCGCACAACCATCCGAGCGGAAACCCAGAGCCAAGCCAGGCGGACAAGGTGC
TGACCCAGCGCCTCAAGGAGGCCCTGGCGTTGGTGGATGTGCGCACGCTGGATCACATCATTGTCGGTGGCACGAAAACA
ACGTCACTTGCGGAATGCGGCTTGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.857

82.84

0.396