Detailed information NTG0261572

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Y89_RS07220
• Genome accession: NZ_CP030913
• Coordinates: 1511116..1512120 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Y89
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1506116..1517120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Y89_RS07190 (Y89_1398)	fghA	1506208..1507059 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
Y89_RS07195 (Y89_1399)	ispF	1507130..1507603 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Y89_RS07200 (Y89_1400)	truD	1507600..1508667 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
Y89_RS07205 (Y89_1401)	surE	1508655..1509404 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
Y89_RS07210 (Y89_1402)	-	1509437..1510072 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Y89_RS07215 (Y89_1403)	-	1510118..1511011 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
Y89_RS07220 (Y89_1404)	rpoS	1511116..1512120 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
Y89_RS07225 (Y89_1405)	fdxA	1512546..1512869 (-)	324	WP_003119354.1	ferredoxin FdxA	-
Y89_RS07230 (Y89_1406)	mutS	1512936..1515503 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
Y89_RS07240 (Y89_1407)	-	1515629..1516636 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=261572 Y89_RS07220 WP_003113871.1 1511116..1512120(+) (rpoS) [Pseudomonas aeruginosa strain Y89]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=261572 Y89_RS07220 WP_003113871.1 1511116..1512120(+) (rpoS) [Pseudomonas aeruginosa strain Y89]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653