Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   Y82_RS20385 Genome accession   NZ_CP030912
Coordinates   4238573..4239169 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain Y82     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4233573..4244169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y82_RS34995 - 4233919..4234116 (-) 198 Protein_3949 TetR family transcriptional regulator -
  Y82_RS20365 (Y82_3864) - 4234209..4235792 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  Y82_RS20370 (Y82_3865) - 4235789..4236676 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  Y82_RS20375 (Y82_3866) - 4236750..4237289 (+) 540 WP_003103931.1 CbrC family protein -
  Y82_RS20380 (Y82_3867) - 4237302..4238450 (-) 1149 WP_015648510.1 acyl-CoA dehydrogenase family protein -
  Y82_RS20385 (Y82_3868) recR 4238573..4239169 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  Y82_RS20390 (Y82_3869) - 4239248..4239574 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  Y82_RS20395 (Y82_3870) dnaX 4239620..4241677 (-) 2058 WP_033979545.1 DNA polymerase III subunit gamma/tau -
  Y82_RS20400 (Y82_3871) - 4241714..4242580 (+) 867 WP_074197913.1 ABC transporter substrate-binding protein -
  Y82_RS20405 (Y82_3872) - 4242870..4244162 (+) 1293 WP_025297350.1 site-specific integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=261501 Y82_RS20385 WP_003087237.1 4238573..4239169(-) (recR) [Pseudomonas aeruginosa strain Y82]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=261501 Y82_RS20385 WP_003087237.1 4238573..4239169(-) (recR) [Pseudomonas aeruginosa strain Y82]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48