Detailed information NTG0261468

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Y82_RS08230
• Genome accession: NZ_CP030912
• Coordinates: 1680026..1681030 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Y82
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1675026..1686030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Y82_RS08200 (Y82_1553)	fghA	1675118..1675969 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
Y82_RS08205 (Y82_1554)	ispF	1676040..1676513 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Y82_RS08210 (Y82_1555)	truD	1676510..1677577 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
Y82_RS08215 (Y82_1556)	surE	1677565..1678314 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
Y82_RS08220 (Y82_1557)	-	1678347..1678982 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Y82_RS08225 (Y82_1558)	-	1679028..1679921 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
Y82_RS08230 (Y82_1559)	rpoS	1680026..1681030 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
Y82_RS08235 (Y82_1560)	fdxA	1681457..1681780 (-)	324	WP_003092272.1	ferredoxin FdxA	-
Y82_RS08240 (Y82_1561)	mutS	1681847..1684414 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
Y82_RS08250 (Y82_1562)	-	1684540..1685547 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=261468 Y82_RS08230 WP_003113871.1 1680026..1681030(+) (rpoS) [Pseudomonas aeruginosa strain Y82]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=261468 Y82_RS08230 WP_003113871.1 1680026..1681030(+) (rpoS) [Pseudomonas aeruginosa strain Y82]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653