Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Y82_RS06900 Genome accession   NZ_CP030912
Coordinates   1428441..1428950 (+) Length   169 a.a.
NCBI ID   WP_009616213.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Y82     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1423441..1433950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y82_RS06890 (Y82_1306) - 1426322..1427131 (+) 810 WP_033871936.1 hypothetical protein -
  Y82_RS06895 (Y82_1307) - 1427229..1427825 (-) 597 WP_023087044.1 hypothetical protein -
  Y82_RS06900 (Y82_1308) radC 1428441..1428950 (+) 510 WP_009616213.1 DNA repair protein RadC Machinery gene
  Y82_RS06905 (Y82_1309) - 1429003..1429812 (-) 810 WP_025297663.1 hypothetical protein -
  Y82_RS06915 (Y82_1310) - 1430406..1431236 (+) 831 WP_025297664.1 DUF932 domain-containing protein -
  Y82_RS06920 (Y82_1311) - 1431316..1433349 (+) 2034 WP_025297665.1 ParB/Srx family N-terminal domain-containing protein -
  Y82_RS06925 - 1433593..1433790 (-) 198 WP_023087048.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18757.41 Da        Isoelectric Point: 5.9951

>NTDB_id=261467 Y82_RS06900 WP_009616213.1 1428441..1428950(+) (radC) [Pseudomonas aeruginosa strain Y82]
MSQLSFSSFDAMLLVRDAQGRYLPASADQILNMARQVIDQKYQRGALFTSPELVKDYLRTKLAGFEHEVFAALFLDSQHR
LLEYVELFRGTIDAAAVYPREVVKEALRVNAAAVIFSHNHPSGNPEPSQADKVLTQRLKEALALVDVRTLDHIIVGGEAT
ASFAEQGLL

Nucleotide


Download         Length: 510 bp        

>NTDB_id=261467 Y82_RS06900 WP_009616213.1 1428441..1428950(+) (radC) [Pseudomonas aeruginosa strain Y82]
ATGTCGCAACTTTCCTTTTCCTCGTTCGATGCCATGCTGCTGGTGCGTGATGCACAGGGGCGCTACCTGCCTGCGTCTGC
AGATCAGATCCTGAATATGGCGCGTCAGGTGATCGACCAGAAATACCAGCGTGGAGCGTTGTTCACGTCGCCGGAGCTGG
TCAAGGACTACCTGCGCACCAAACTGGCTGGTTTTGAGCACGAGGTGTTTGCGGCGCTATTCCTCGACAGCCAGCATCGG
CTGCTTGAGTATGTGGAGTTGTTTCGCGGCACCATCGATGCGGCGGCGGTGTATCCACGGGAAGTAGTGAAGGAGGCACT
GCGCGTCAACGCAGCGGCGGTGATTTTCTCGCACAACCATCCGAGCGGAAATCCAGAGCCCAGCCAGGCAGATAAGGTGC
TGACCCAGCGCCTCAAGGAGGCCCTGGCGCTGGTGGATGTGCGCACGCTGGATCACATCATCGTGGGTGGCGAGGCAACT
GCATCATTCGCAGAGCAGGGGCTGCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.571

82.84

0.402