Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Y82_RS02505 Genome accession   NZ_CP030912
Coordinates   511687..512052 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain Y82     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 506687..517052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y82_RS02475 (Y82_0456) pyrR 507309..507821 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  Y82_RS02480 (Y82_0457) ruvX 507933..508367 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  Y82_RS02485 (Y82_0458) - 508367..508936 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  Y82_RS02490 (Y82_0459) - 508985..509878 (-) 894 WP_015649761.1 energy transducer TonB -
  Y82_RS02495 (Y82_0460) gshB 510025..510978 (-) 954 WP_003100943.1 glutathione synthase -
  Y82_RS02500 pilG 511233..511640 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  Y82_RS02505 pilH 511687..512052 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  Y82_RS02510 (Y82_0463) - 512103..512639 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  Y82_RS02515 (Y82_0464) pilJ 512724..514772 (+) 2049 WP_115748805.1 chemotaxis chemoreceptor PilJ -
  Y82_RS02520 (Y82_0465) pilK 514833..515708 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=261455 Y82_RS02505 WP_003084587.1 511687..512052(+) (pilH) [Pseudomonas aeruginosa strain Y82]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=261455 Y82_RS02505 WP_003084587.1 511687..512052(+) (pilH) [Pseudomonas aeruginosa strain Y82]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGATGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364