Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   Y31_RS23790 Genome accession   NZ_CP030910
Coordinates   5002147..5002743 (-) Length   198 a.a.
NCBI ID   WP_023106794.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Y31     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4997147..5007743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y31_RS23770 (Y31_4565) - 4997783..4999366 (+) 1584 WP_012614321.1 NAD(P)/FAD-dependent oxidoreductase -
  Y31_RS23775 (Y31_4566) - 4999363..5000250 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  Y31_RS23780 (Y31_4567) - 5000324..5000863 (+) 540 WP_003103931.1 CbrC family protein -
  Y31_RS23785 (Y31_4568) - 5000876..5002024 (-) 1149 WP_115759737.1 acyl-CoA dehydrogenase family protein -
  Y31_RS23790 (Y31_4569) recR 5002147..5002743 (-) 597 WP_023106794.1 recombination mediator RecR Machinery gene
  Y31_RS23795 (Y31_4570) - 5002822..5003148 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  Y31_RS23800 (Y31_4571) dnaX 5003194..5005281 (-) 2088 WP_058181449.1 DNA polymerase III subunit gamma/tau -
  Y31_RS23805 (Y31_4572) - 5005318..5006184 (+) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  Y31_RS23815 (Y31_4573) - 5006438..5006815 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21154.38 Da        Isoelectric Point: 5.9297

>NTDB_id=261310 Y31_RS23790 WP_023106794.1 5002147..5002743(-) (recR) [Pseudomonas aeruginosa strain Y31]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GHGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=261310 Y31_RS23790 WP_023106794.1 5002147..5002743(-) (recR) [Pseudomonas aeruginosa strain Y31]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGTGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGATCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCATGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48