Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CYJ15_RS04530 Genome accession   NZ_CP025437
Coordinates   943813..944763 (+) Length   316 a.a.
NCBI ID   WP_014095860.1    Uniprot ID   G2TQ58
Organism   Heyndrickxia coagulans strain LA204     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 938813..949763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ15_RS04515 (CYJ15_04515) - 939670..941106 (+) 1437 WP_017551675.1 S41 family peptidase -
  CYJ15_RS18250 (CYJ15_04520) - 941356..941565 (+) 210 WP_046721397.1 hypothetical protein -
  CYJ15_RS04525 (CYJ15_04525) - 942313..943500 (+) 1188 WP_071451769.1 PDZ domain-containing protein -
  CYJ15_RS04530 (CYJ15_04530) ceuB 943813..944763 (+) 951 WP_014095860.1 ABC transporter permease Machinery gene
  CYJ15_RS04535 (CYJ15_04535) - 944756..945706 (+) 951 WP_014095859.1 iron chelate uptake ABC transporter family permease subunit -
  CYJ15_RS04540 (CYJ15_04540) - 945700..946458 (+) 759 WP_014095858.1 ABC transporter ATP-binding protein -
  CYJ15_RS04545 (CYJ15_04545) - 946473..947411 (+) 939 WP_046721395.1 siderophore ABC transporter substrate-binding protein -
  CYJ15_RS04550 (CYJ15_04550) - 947468..947704 (-) 237 WP_026104642.1 4Fe-4S binding protein -
  CYJ15_RS04555 (CYJ15_04555) - 948011..948313 (+) 303 WP_014095855.1 DUF5316 domain-containing protein -
  CYJ15_RS04560 (CYJ15_04560) - 948424..949116 (+) 693 WP_013858648.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34436.57 Da        Isoelectric Point: 10.0424

>NTDB_id=261307 CYJ15_RS04530 WP_014095860.1 943813..944763(+) (ceuB) [Heyndrickxia coagulans strain LA204]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKFDLI
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNIGLVLVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=261307 CYJ15_RS04530 WP_014095860.1 943813..944763(+) (ceuB) [Heyndrickxia coagulans strain LA204]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGTCTGATCAGCATCATCA
TTGCAGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGTTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTAGTTGCGATCATCCTGTTTTCGGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCTCTGGCTGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACGATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGCTCTGTATCGACTTTCTTTGCGTATAAATTCGATTTAATC
CAGAGCCTGTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGAAAGTACGAGATGCTTTATTTAGCAGTTCC
CGCCGTTTTGGTCGCGTATGTGTTCGCAAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAACCTTGGCC
TGAATTATAAGCAGGTGGTCAATATCGGCCTTGTCCTTGTCGCGCTGATTACTTCGGCAACGGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAACATTGTGTCCATTTACCGCGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTATTTTGCGATATTTTGGGGCGCCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGACACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2TQ58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516

Multiple sequence alignment