Detailed information NTG0261279

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Y31_RS11145
• Genome accession: NZ_CP030910
• Coordinates: 2312470..2313474 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Y31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2307470..2318474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Y31_RS11115 (Y31_2132)	fghA	2307562..2308413 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
Y31_RS11120 (Y31_2133)	ispF	2308484..2308957 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Y31_RS11125 (Y31_2134)	truD	2308954..2310021 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
Y31_RS11130 (Y31_2135)	surE	2310009..2310758 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
Y31_RS11135 (Y31_2136)	-	2310791..2311426 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Y31_RS11140 (Y31_2137)	-	2311472..2312365 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
Y31_RS11145 (Y31_2138)	rpoS	2312470..2313474 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
Y31_RS11150 (Y31_2139)	fdxA	2313901..2314224 (-)	324	WP_003092272.1	ferredoxin FdxA	-
Y31_RS11155 (Y31_2140)	mutS	2314291..2316858 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
Y31_RS11165 (Y31_2141)	-	2316984..2317991 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=261279 Y31_RS11145 WP_003113871.1 2312470..2313474(+) (rpoS) [Pseudomonas aeruginosa strain Y31]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=261279 Y31_RS11145 WP_003113871.1 2312470..2313474(+) (rpoS) [Pseudomonas aeruginosa strain Y31]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653