Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CXB49_RS06660 Genome accession   NZ_CP025429
Coordinates   1385294..1386655 (+) Length   453 a.a.
NCBI ID   WP_101707664.1    Uniprot ID   A0A2H5DTY1
Organism   Chromobacterium sp. ATCC 53434     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380294..1391655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB49_RS06635 (CXB49_06635) hpnC 1380865..1381677 (+) 813 WP_101707660.1 squalene synthase HpnC -
  CXB49_RS06640 (CXB49_06640) hpnD 1381745..1382590 (+) 846 WP_101707661.1 presqualene diphosphate synthase HpnD -
  CXB49_RS06645 (CXB49_06645) hpnE 1382587..1383861 (+) 1275 WP_233492962.1 hydroxysqualene dehydroxylase HpnE -
  CXB49_RS06650 (CXB49_06650) - 1383858..1384619 (+) 762 WP_101707662.1 SDR family oxidoreductase -
  CXB49_RS06655 (CXB49_06655) - 1384639..1385187 (+) 549 WP_101707663.1 hypothetical protein -
  CXB49_RS06660 (CXB49_06660) radA 1385294..1386655 (+) 1362 WP_101707664.1 DNA repair protein RadA Machinery gene
  CXB49_RS06665 (CXB49_06665) - 1386660..1387220 (+) 561 WP_101707665.1 sigma-70 family RNA polymerase sigma factor -
  CXB49_RS06670 (CXB49_06670) - 1387217..1387399 (+) 183 WP_101707666.1 zf-HC2 domain-containing protein -
  CXB49_RS06675 (CXB49_06675) - 1387498..1387848 (-) 351 WP_101707667.1 DUF2325 domain-containing protein -
  CXB49_RS06680 (CXB49_06680) - 1388059..1388856 (+) 798 WP_101707668.1 transporter substrate-binding domain-containing protein -
  CXB49_RS06685 (CXB49_06685) - 1388859..1389827 (-) 969 WP_101707669.1 hypothetical protein -
  CXB49_RS06690 (CXB49_06690) - 1389912..1391531 (-) 1620 WP_369826550.1 ABC1 kinase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48680.03 Da        Isoelectric Point: 6.8125

>NTDB_id=261270 CXB49_RS06660 WP_101707664.1 1385294..1386655(+) (radA) [Chromobacterium sp. ATCC 53434]
MAKNKTVFSCTECGGQSPKWQGQCPHCNAWNTLVEAVAAPAAAGPRFQSWAANVTKVQKLSEVQTAETPRDPSGIDELDR
VLGGGIVRGAVVLIGGDPGIGKSTLLLQALSQIGQSRKVLYVSGEESAQQIALRASRLALDTSSVDLLAEICIENILETL
KRELPEVVVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQSGITVLLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSNYRMIRAIKNRFGAVNELGVFAMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGTRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKALPEKLVVFGEVGLAGEV
RPVTRGQERLKEAAKLGFTRAIVPSANKPRQEIEGLKVLAVDRLDQAVEFCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=261270 CXB49_RS06660 WP_101707664.1 1385294..1386655(+) (radA) [Chromobacterium sp. ATCC 53434]
ATGGCCAAGAACAAAACCGTATTCAGCTGCACCGAGTGCGGCGGACAATCGCCGAAGTGGCAGGGCCAGTGCCCGCATTG
CAACGCCTGGAACACCCTGGTCGAGGCGGTGGCCGCGCCGGCCGCCGCCGGTCCGCGCTTCCAGTCCTGGGCGGCCAACG
TCACCAAGGTGCAGAAGCTGTCCGAGGTGCAGACCGCGGAAACGCCGCGAGACCCGTCCGGCATCGACGAGCTGGACCGC
GTGCTCGGCGGCGGCATCGTCCGCGGCGCCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGCTGCT
GCAGGCCTTGTCGCAGATCGGCCAAAGCCGCAAGGTGCTCTACGTGTCCGGCGAGGAGTCGGCGCAGCAGATCGCGCTGC
GCGCCTCCAGGCTGGCGCTCGATACCAGCAGCGTCGATCTGCTGGCCGAGATCTGCATCGAGAACATCCTGGAGACGCTG
AAGCGCGAGCTGCCCGAGGTGGTGGTGATCGACTCGATCCAGACGCTGTACACCGAGCAGGTGACCTCGGCGCCCGGCTC
GGTGTCGCAGGTGCGCGAGTGCGCGGCGCAGCTGACGCGGATGGCCAAGCAGAGCGGCATCACCGTGCTCTTGGTCGGCC
ACGTCACCAAGGAGGGCTCGCTGGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGCGAT
TCCCACTCCAACTACCGGATGATACGCGCGATCAAGAACCGTTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGCGATGAC
CGACCGCGGCCTGAAGGGCGTGTCCAATCCGTCGGCGATCTTCCTGTCCTCCTACCGCGACGATGTCGCCGGCTCCTGCG
TGCTGGTGACGCAGGAGGGCACGCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACGACTGCCACGGTTTCCAGCCG
AAGCGGCTGACCGTCGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCGTCGCCTG
TTTCGACCAGGACGTGTTCCTGAACGCCGTCGGCGGCGTCAAGATCAACGAGCCGGCGGCCGATCTGGCCATCATCCTGG
CGATGGTGTCGTCGCTGCGGAACAAGGCGCTGCCGGAGAAGCTGGTGGTGTTCGGCGAAGTGGGCCTGGCCGGCGAGGTC
AGGCCGGTGACGCGCGGGCAGGAGCGGCTGAAGGAAGCCGCCAAGCTCGGCTTCACCCGCGCCATCGTGCCCTCCGCCAA
CAAGCCGCGCCAGGAGATCGAGGGTTTGAAGGTGCTGGCCGTCGACCGCCTCGATCAGGCGGTGGAATTCTGCAGGGAGT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H5DTY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.439

100

0.508
  radA Streptococcus mitis NCTC 12261

47.788

99.779

0.477
  radA Streptococcus mitis SK321

47.788

99.779

0.477
  radA Streptococcus pneumoniae Rx1

49.764

93.598

0.466
  radA Streptococcus pneumoniae D39

49.764

93.598

0.466
  radA Streptococcus pneumoniae R6

49.764

93.598

0.466
  radA Streptococcus pneumoniae TIGR4

49.764

93.598

0.466

Multiple sequence alignment