Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CXB49_RS04915 Genome accession   NZ_CP025429
Coordinates   1041409..1042806 (-) Length   465 a.a.
NCBI ID   WP_101707366.1    Uniprot ID   A0A2H5DT34
Organism   Chromobacterium sp. ATCC 53434     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036409..1047806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB49_RS04885 (CXB49_04885) - 1036511..1037971 (-) 1461 WP_101707357.1 NAD(P)H-hydrate dehydratase -
  CXB49_RS04890 (CXB49_04890) - 1037973..1038581 (-) 609 WP_101707358.1 flavin prenyltransferase UbiX -
  CXB49_RS04895 (CXB49_04895) rapZ 1038646..1039488 (-) 843 WP_101707360.1 RNase adapter RapZ -
  CXB49_RS04900 (CXB49_04900) hprK 1039469..1040425 (-) 957 WP_101707362.1 HPr(Ser) kinase/phosphatase -
  CXB49_RS04905 (CXB49_04905) ptsN 1040418..1040879 (-) 462 WP_101707364.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CXB49_RS04910 (CXB49_04910) hpf 1041002..1041340 (-) 339 WP_101707365.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CXB49_RS04915 (CXB49_04915) rpoN/rpoN1 1041409..1042806 (-) 1398 WP_101707366.1 RNA polymerase factor sigma-54 Machinery gene
  CXB49_RS04920 (CXB49_04920) lptB 1042813..1043541 (-) 729 WP_101707367.1 LPS export ABC transporter ATP-binding protein -
  CXB49_RS04925 (CXB49_04925) lptA 1043538..1044101 (-) 564 WP_101707368.1 lipopolysaccharide transport periplasmic protein LptA -
  CXB49_RS04930 (CXB49_04930) lptC 1044091..1044660 (-) 570 WP_101707369.1 LPS export ABC transporter periplasmic protein LptC -
  CXB49_RS04935 (CXB49_04935) - 1044657..1045181 (-) 525 WP_101710608.1 HAD family hydrolase -
  CXB49_RS04940 (CXB49_04940) - 1045226..1046206 (-) 981 WP_101707370.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 51133.95 Da        Isoelectric Point: 4.7103

>NTDB_id=261268 CXB49_RS04915 WP_101707366.1 1041409..1042806(-) (rpoN/rpoN1) [Chromobacterium sp. ATCC 53434]
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQAEVDRFLLDNPLLERGDEPHDGEAAPDGADSGAGETQDADGRDDGA
GELLDWGAGARQGGDDDYDPMLNVPSQPSLREHLLAQLGEIALSDRDRAVACLLIEELDDDGYLPLDLDELAGNLPLELQ
LDSDELAIGLTLLQQFDPAGVGARSLAESLQLQLLRRPADEPGRALALEIAREHLELLGGRDYAKLKKLFGCQDEALRQA
QALISRLNPYPASGYGHGDIHYVIPDIAVRKLRGRWVAELNRSAMPRLRVNRLYERLLADKRGAGGELAGPLQEARWLVK
NIQQRFDTILKVAEAIVERQQSFFEHGEVAMRPLILRDIADEIGLHESTVSRSTSQKYLLCPRGLFELKYFFGSSLETDG
GGECSATAIKAHIRGMIDGEDRAKPLSDSAIADALARQGIQVARRTVAKYREAMQIPAVNLRKAL

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=261268 CXB49_RS04915 WP_101707366.1 1041409..1042806(-) (rpoN/rpoN1) [Chromobacterium sp. ATCC 53434]
ATGAAACAGGCCCTTCAGCTCAAGGTCTCGCAGCAACTGACGCTGACGCCACAGCTGCAGCAATCGATCAAACTGCTGCA
GCTGTCCACGCTGGACCTGCAAGCCGAGGTGGATCGCTTCCTGCTCGACAACCCGCTGCTGGAGCGCGGCGACGAGCCGC
ACGACGGCGAAGCCGCGCCGGACGGCGCCGACAGCGGCGCCGGCGAAACGCAGGACGCCGACGGCCGTGACGACGGCGCC
GGCGAGCTGCTGGACTGGGGCGCAGGCGCCCGCCAGGGCGGCGACGACGACTATGATCCGATGCTCAACGTGCCCAGCCA
GCCCAGCCTGCGCGAGCACCTGCTGGCGCAGCTGGGGGAGATCGCGCTGAGCGACCGCGACCGCGCGGTGGCCTGCCTGC
TGATCGAAGAGCTGGACGACGACGGCTACCTGCCGCTGGACCTCGACGAGCTGGCCGGCAATCTGCCGCTGGAGCTGCAG
CTGGACAGCGACGAGCTGGCCATCGGCCTGACACTGCTGCAGCAGTTCGATCCGGCCGGCGTCGGCGCGCGCTCGTTGGC
CGAATCGCTGCAACTGCAGCTGTTGCGGCGGCCGGCCGACGAGCCCGGCCGCGCGCTGGCGCTGGAGATCGCGCGCGAAC
ACCTGGAGCTGCTGGGCGGGCGCGACTACGCCAAGCTGAAGAAATTGTTCGGCTGCCAGGACGAGGCGCTGCGCCAGGCG
CAGGCGCTGATCTCCCGGCTGAACCCCTACCCCGCCAGCGGCTACGGCCACGGCGACATCCACTACGTGATTCCCGACAT
CGCGGTCAGGAAGCTGCGCGGCCGCTGGGTCGCCGAACTGAACCGCTCGGCGATGCCGCGGCTGCGCGTCAACCGCCTGT
ACGAGCGACTGCTGGCCGACAAACGCGGCGCCGGCGGCGAACTGGCCGGCCCGCTGCAGGAGGCGCGCTGGCTGGTAAAG
AACATCCAGCAGCGATTTGACACTATTCTGAAAGTGGCGGAAGCTATCGTTGAACGGCAGCAATCGTTCTTTGAACATGG
CGAAGTGGCGATGCGGCCGCTGATCCTGCGCGATATCGCGGACGAGATCGGCCTGCACGAATCCACCGTTTCCCGCTCGA
CCAGCCAGAAGTACCTGCTCTGCCCGCGCGGCCTGTTCGAGCTCAAGTACTTCTTCGGCAGTTCGCTGGAAACCGACGGC
GGAGGGGAATGCTCCGCCACCGCCATCAAGGCTCACATACGCGGCATGATAGACGGCGAGGACCGCGCGAAACCGCTGTC
CGACAGCGCCATCGCCGACGCGCTGGCCCGCCAGGGAATACAGGTTGCCAGACGCACCGTAGCCAAGTATCGTGAAGCCA
TGCAGATTCCGGCGGTGAATCTGCGCAAGGCGCTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(312-463)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H5DT34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.098

100

0.551

Multiple sequence alignment