Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Y31_RS04220 Genome accession   NZ_CP030910
Coordinates   873039..873533 (+) Length   164 a.a.
NCBI ID   WP_009397199.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Y31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 868039..878533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y31_RS04205 (Y31_0806) - 868773..869207 (+) 435 WP_115759310.1 TIGR03751 family conjugal transfer lipoprotein -
  Y31_RS04210 (Y31_0807) - 869207..872086 (+) 2880 WP_009397201.1 conjugative transfer ATPase -
  Y31_RS04215 (Y31_0808) - 872100..872843 (+) 744 WP_009397200.1 thioredoxin domain-containing protein -
  Y31_RS04220 (Y31_0809) radC 873039..873533 (+) 495 WP_009397199.1 DNA repair protein RadC Machinery gene
  Y31_RS04225 (Y31_0810) - 873701..874150 (+) 450 WP_064481783.1 TIGR03757 family integrating conjugative element protein -
  Y31_RS04230 (Y31_0811) - 874147..875091 (+) 945 WP_064481784.1 TIGR03756 family integrating conjugative element protein -
  Y31_RS04235 (Y31_0812) - 875102..876508 (+) 1407 WP_064481785.1 integrating conjugative element protein -
  Y31_RS04240 (Y31_0813) - 876505..876858 (+) 354 WP_064481786.1 hypothetical protein -
  Y31_RS04245 (Y31_0814) - 876874..878394 (+) 1521 WP_064481787.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17795.50 Da        Isoelectric Point: 6.3289

>NTDB_id=261259 Y31_RS04220 WP_009397199.1 873039..873533(+) (radC) [Pseudomonas aeruginosa strain Y31]
MSLVIADSCPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=261259 Y31_RS04220 WP_009397199.1 873039..873533(+) (radC) [Pseudomonas aeruginosa strain Y31]
ATGTCTCTTGTCATCGCCGACTCCTGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCAGCGCTGGGCAGTCCCGCCGCCGTGCGTGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTTGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAACGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCATCCCTCGGGGAACACCGAGCCCTCGGCCGCCGATCGTGCGATCACCGAGCGGCTGA
AGAGCGCCCTGGCCACCGTCGATGTCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421