Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SPSF3K_RS08625 Genome accession   NZ_CP025420
Coordinates   1704837..1706639 (-) Length   600 a.a.
NCBI ID   WP_003108203.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699837..1711639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS11400 - 1700403..1700657 (-) 255 WP_233847622.1 hypothetical protein -
  SPSF3K_RS11495 (SPSF3K_01744) - 1700642..1700764 (-) 123 WP_003104426.1 hypothetical protein -
  SPSF3K_RS11530 - 1701016..1701588 (-) 573 Protein_1704 ECF transporter S component -
  SPSF3K_RS08610 (SPSF3K_01746) - 1701989..1702639 (-) 651 WP_003108204.1 HAD family hydrolase -
  SPSF3K_RS08615 (SPSF3K_01747) - 1702653..1703894 (-) 1242 WP_003107259.1 OFA family MFS transporter -
  SPSF3K_RS08620 (SPSF3K_01748) - 1704028..1704666 (-) 639 WP_003107261.1 HAD family hydrolase -
  SPSF3K_RS08625 (SPSF3K_01749) pepF 1704837..1706639 (-) 1803 WP_003108203.1 oligoendopeptidase F Regulator
  SPSF3K_RS08630 (SPSF3K_01750) - 1706665..1707600 (-) 936 WP_003108202.1 competence protein CoiA -
  SPSF3K_RS08635 (SPSF3K_01751) - 1707670..1708815 (-) 1146 WP_003108201.1 MFS transporter -
  SPSF3K_RS08640 (SPSF3K_01752) - 1708915..1709631 (-) 717 WP_003107266.1 pseudouridine synthase -
  SPSF3K_RS08645 (SPSF3K_01753) nagB 1709709..1710413 (-) 705 WP_003104983.1 glucosamine-6-phosphate deaminase -
  SPSF3K_RS08650 (SPSF3K_01754) queA 1710605..1711633 (+) 1029 WP_003108200.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69632.56 Da        Isoelectric Point: 4.6524

>NTDB_id=261182 SPSF3K_RS08625 WP_003108203.1 1704837..1706639(-) (pepF) [Streptococcus parauberis strain SPOF3K]
MTDNRSHLDEKYTWDLSTIFKTDEEFETELEVLNQDADAAQKYAGHLLDSSKMLFEITNKQLELARRIEKVYVYASMKND
QDTTVAKYQEYQAKASSLYAKFGQVFSFYEPEFMTMSTEQLDTFKAEESQLELYNHYFEKLLKYKEHVLSQREEELLAGA
QEIFNGAEETFSILDNADLIFPIVKDDNGKEVEITHGNFISLMESKDRNVRKAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYQARVHKYDSARQAAMSANFIPEAVYDTLLSSVNKHLPLLHRYLKLRQEVLGLDELKMYDVYTPLSETNLDMTYDEAIE
KVQTVLEVFGKEYSDRVNRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDNLDNLYTLIHETGHSLHSTLTREN
QPYIYGDYSIFLAEIASTTNENILTEALLKEVADDKTRFAILNNYLDGFRGSVFRQTQFAEFEHAIHQADQNGEVLTSEY
INNLYAELNQKYYGLAKEDNHFIQYEWARIPHFYYNYYVYQYSTGFAAASYLANKIVHGSQEDIDAYLSYLKAGNSDYPL
KVIAKAGVDMTQEDYLDQAFAVFEARLTELEELVAKGAHK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=261182 SPSF3K_RS08625 WP_003108203.1 1704837..1706639(-) (pepF) [Streptococcus parauberis strain SPOF3K]
ATGACAGATAATCGTAGTCATTTAGATGAAAAGTACACTTGGGATTTAAGTACAATTTTCAAAACAGATGAAGAATTTGA
AACTGAACTAGAGGTCTTAAATCAGGATGCTGATGCAGCGCAAAAATATGCTGGTCATTTATTAGATTCAAGTAAAATGT
TGTTTGAAATTACGAATAAGCAGCTTGAATTGGCGCGTCGCATTGAAAAAGTCTATGTTTATGCATCAATGAAAAACGAT
CAAGATACTACCGTAGCCAAATATCAAGAGTATCAAGCAAAAGCATCTAGTTTATATGCAAAATTTGGGCAAGTTTTCTC
ATTTTATGAGCCTGAATTTATGACCATGTCAACTGAACAATTAGATACTTTTAAAGCTGAAGAAAGTCAATTGGAACTTT
ACAATCACTACTTTGAAAAATTATTAAAATATAAAGAGCATGTTTTGTCTCAACGTGAGGAAGAACTTTTAGCTGGTGCA
CAAGAAATCTTTAATGGGGCAGAAGAAACATTTAGTATTTTGGATAATGCCGATTTGATATTCCCAATTGTGAAAGATGA
TAATGGTAAGGAAGTTGAAATCACACATGGTAACTTTATCAGTTTGATGGAATCAAAAGATCGTAATGTGCGCAAAGCTG
CTTATGAAGCAATGTATAGTACTTATGAACAATTTCAACATACTTACGCCAAAACACTTCAAACAAATGTAAAAGTACAA
AACTATCAAGCGCGTGTTCATAAATATGACTCTGCTCGCCAAGCAGCAATGTCTGCAAATTTCATTCCTGAAGCAGTTTA
TGACACTTTACTTTCATCAGTAAATAAACATTTACCATTATTACATCGTTACTTGAAATTAAGACAAGAAGTTCTTGGTT
TGGATGAACTTAAAATGTATGATGTTTATACACCATTATCTGAGACAAATCTTGATATGACATATGATGAAGCAATTGAG
AAAGTACAAACTGTTTTAGAAGTGTTTGGTAAGGAATATTCAGACCGAGTAAATCGTGCATTCACAGAACGTTGGATTGA
TGTTCATGTTAATAAAGGTAAACGTTCAGGTGCCTATTCAGGTGGATCATATGATACAAATGCATTTATGCTACTTAACT
GGCAAGATAATCTTGATAACCTTTATACACTGATTCATGAAACTGGCCACAGCCTACATTCAACTTTAACTAGAGAAAAT
CAACCATATATTTATGGTGATTATAGTATCTTCTTGGCAGAAATTGCATCGACAACAAATGAAAATATTTTAACTGAAGC
TCTATTGAAAGAAGTAGCTGATGATAAAACTCGTTTTGCCATTTTAAATAATTATTTGGATGGCTTTAGAGGTTCTGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAGCATGCGATTCACCAAGCTGATCAAAATGGTGAAGTCTTAACAAGTGAATAC
ATTAATAATTTATACGCCGAACTTAATCAAAAATATTATGGACTAGCTAAAGAAGATAATCATTTTATTCAATATGAGTG
GGCTAGAATTCCACATTTCTACTATAATTATTATGTTTATCAATACTCAACTGGTTTTGCTGCGGCAAGCTATTTAGCAA
ATAAAATTGTCCATGGAAGTCAAGAAGATATTGATGCTTATCTGTCATATTTGAAAGCAGGAAATTCTGATTACCCATTA
AAAGTCATTGCCAAAGCAGGTGTTGATATGACTCAAGAAGACTACTTGGATCAAGCATTCGCTGTTTTTGAAGCACGATT
AACTGAATTAGAAGAATTAGTTGCTAAAGGCGCGCACAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.119

99.833

0.71

Multiple sequence alignment