Detailed information NTG0261178

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SPSF3K_RS05465
• Genome accession: NZ_CP025420
• Coordinates: 1094963..1097071 (-)
• Length: 702 a.a.
• NCBI ID: WP_004234254.1
• Uniprot ID: A0AAE4KV60
• Organism: Streptococcus parauberis strain SPOF3K
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1089963..1102071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPSF3K_RS05435 (SPSF3K_01104)	-	1090638..1091477 (+)	840	WP_003105934.1	thymidylate synthase	-
SPSF3K_RS05440 (SPSF3K_01105)	-	1091554..1092069 (+)	516	WP_003104878.1	dihydrofolate reductase	-
SPSF3K_RS05450 (SPSF3K_01107)	clpX	1092274..1093503 (+)	1230	WP_003103169.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
SPSF3K_RS05455 (SPSF3K_01108)	yihA	1093512..1094111 (+)	600	WP_003104323.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
SPSF3K_RS05460 (SPSF3K_01109)	-	1094275..1094940 (+)	666	WP_004234256.1	hypothetical protein	-
SPSF3K_RS05465 (SPSF3K_01110)	clpC	1094963..1097071 (-)	2109	WP_004234254.1	AAA family ATPase	Regulator
SPSF3K_RS05470 (SPSF3K_01111)	rplJ	1097521..1098021 (+)	501	WP_003104757.1	50S ribosomal protein L10	-
SPSF3K_RS05475 (SPSF3K_01112)	rplL	1098087..1098452 (+)	366	WP_003103838.1	50S ribosomal protein L7/L12	-
SPSF3K_RS11575	-	1099055..1099177 (+)	123	WP_003106101.1	hypothetical protein	-
SPSF3K_RS05480 (SPSF3K_01113)	-	1099177..1100031 (+)	855	WP_004234250.1	replication initiator protein A	-
SPSF3K_RS11200 (SPSF3K_01114)	-	1100028..1100189 (+)	162	WP_003104080.1	hypothetical protein	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77713.58 Da
• Isoelectric Point: 4.8331

>NTDB_id=261178 SPSF3K_RS05465 WP_004234254.1 1094963..1097071(-) (clpC) [Streptococcus parauberis strain SPOF3K]
MTNYYGKDPFGSMDDIFNQLMGNTGGYQTENRRYLVNGREMTPEEFQEYRQTGKLSSTAPTQEQGYPQNQKEDGILNQLG
TNLTEEARQGHLDPVIGRNKEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVAGDVPAAIKNKEIISIDISGL
EAGTQYRGAFEENIQNLIKEVKEAGNVILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAVDYSVQYIPQRSLPDKAIDLIDMTAAHLAA
QHPVTDLKSLETAIASEKDKQEKAVAAEDYELALQAKVRIEELQKQMANHTEGQKVTATINDVAESVERLTGVPVSNMGA
SDLERLKEIGNRLRGHVIGQDQAVQAVAKAIRRNRAGFDDDNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNQYTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTIDFKNT
VIIATSNAGFGNEALTGQEDHDQKIMDRIAPYFRPEFLNRFNGVIEFSHLEKKDLKEIVELMLTEVNQTINKKGITLEVT
EPVKEELIELGYDKAMGVRPLRRVIEQEIRDRITDYYLEHPDDKHLKANLADGQIVISKQDK

Nucleotide

• Length: 2109 bp

>NTDB_id=261178 SPSF3K_RS05465 WP_004234254.1 1094963..1097071(-) (clpC) [Streptococcus parauberis strain SPOF3K]
ATGACAAACTATTATGGAAAAGACCCTTTTGGTAGCATGGATGACATTTTTAATCAATTGATGGGTAACACAGGCGGTTA
TCAAACTGAAAATCGTCGTTACCTAGTTAATGGGCGTGAAATGACACCTGAAGAATTTCAAGAATATCGACAAACTGGTA
AGCTCAGTTCTACTGCTCCTACTCAGGAACAAGGCTATCCCCAAAATCAAAAAGAAGATGGCATTCTAAACCAATTAGGT
ACCAACTTAACTGAAGAAGCACGACAAGGACACTTAGATCCAGTCATTGGACGAAATAAAGAAATTCAAGATACAGCTGA
AATATTAGCTCGCCGGACCAAGAACAATCCCGTTCTAGTAGGTGATGCGGGGGTTGGTAAAACAGCTGTGGTCGAAGGCT
TAGCCCAAGCTATCGTTGCTGGTGACGTCCCTGCTGCCATTAAAAACAAAGAAATTATTTCTATTGATATTTCCGGCTTA
GAAGCAGGTACTCAATACCGTGGTGCTTTTGAAGAAAATATTCAGAATTTAATTAAAGAAGTTAAAGAAGCCGGGAATGT
TATCCTCTTCTTTGATGAAATTCATCAAATTTTAGGCGCTGGCTCAACAGGTGGTGATTCTGGTTCCAAAGGCTTGGCCG
ATATTCTTAAACCAGCCCTATCTCGTGGCGAGTTGACCGTCATCGGTGCGACAACTCAAGATGAATATCGAAACACTATT
CTGAAAAATGCGGCCTTGGCTCGTCGTTTTAACGAAGTTAAAGTCAATGCGCCTTCTGCCGAAGATACCTTCCACATTTT
GATGGGTATCAGGAATCTTTATGAGCAACACCACAACGTCATTCTTCCGGATTCTGTTTTGAAAGCAGCCGTGGATTACT
CCGTTCAGTACATTCCACAGCGTAGTCTTCCAGACAAAGCCATCGATTTAATTGACATGACGGCTGCCCATTTAGCTGCG
CAACACCCAGTCACTGATTTGAAGAGTCTTGAAACAGCAATTGCTAGTGAGAAAGACAAGCAAGAAAAGGCTGTCGCTGC
AGAAGATTATGAGTTAGCCTTGCAAGCTAAAGTACGAATTGAAGAATTACAAAAGCAAATGGCAAACCATACCGAAGGTC
AAAAAGTGACCGCAACCATCAACGATGTCGCCGAATCAGTTGAACGTCTAACCGGCGTACCAGTTTCCAATATGGGCGCA
AGTGACTTAGAACGTTTGAAAGAAATTGGCAACCGACTTAGAGGACATGTCATCGGACAGGATCAAGCTGTTCAAGCAGT
CGCAAAGGCTATCCGTCGTAACCGTGCCGGCTTTGATGATGACAATCGCCCAATTGGGTCATTCCTCTTTGTTGGTCCGA
CCGGCGTTGGTAAAACGGAATTAGCCAAACAGCTTGCACTTGACATGTTTGGTTCCAAGGATGCGATCATTCGTTTAGAT
ATGTCAGAATACAGTGATCGCACTGCCGTTTCTAAATTGATTGGGACTACTGCTGGTTATGTTGGTTACGACGACAATCA
ATACACATTAACTGAACGTGTCCGTCGTAATCCATACTCAATTATTTTACTGGATGAAATTGAAAAAGCAGACCCACAAG
TCATTACCCTACTACTCCAAGTATTAGATGATGGTCGTTTAACTGATGGCCAAGGTAATACGATTGACTTCAAAAATACA
GTGATTATTGCTACATCTAATGCTGGTTTTGGCAATGAAGCATTAACGGGTCAAGAAGATCATGACCAAAAAATTATGGA
CCGAATCGCTCCTTATTTTAGACCTGAATTCTTAAATCGTTTTAATGGTGTGATAGAATTCTCACATCTAGAAAAAAAGG
ATTTGAAAGAAATTGTTGAATTAATGTTAACGGAAGTTAATCAAACAATCAATAAAAAAGGTATCACTTTAGAAGTAACA
GAACCTGTTAAAGAGGAACTAATTGAATTAGGATATGACAAAGCTATGGGAGTTAGACCATTACGCCGTGTCATTGAACA
AGAAATCCGTGACCGTATAACAGACTATTATTTGGAACATCCCGATGATAAACATCTAAAAGCAAATTTAGCAGATGGTC
AAATTGTGATTAGTAAACAAGACAAATGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

• AAA lid domain (AAA_lid_9) (259-353)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-602)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-680)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.515	100	0.489
clpE	Streptococcus mutans UA159	47.532	100	0.48
clpE	Streptococcus pneumoniae TIGR4	46.968	100	0.474
clpE	Streptococcus pneumoniae Rx1	46.968	100	0.474
clpE	Streptococcus pneumoniae D39	46.968	100	0.474
clpE	Streptococcus pneumoniae R6	46.968	100	0.474
clpC	Bacillus subtilis subsp. subtilis str. 168	44.651	91.88	0.41
clpC	Streptococcus pneumoniae TIGR4	41.617	95.157	0.396
clpC	Streptococcus pneumoniae Rx1	41.617	95.157	0.396
clpC	Streptococcus pneumoniae D39	41.617	95.157	0.396
clpC	Streptococcus mutans UA159	40.246	92.735	0.373
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.842	88.177	0.369
clpC	Streptococcus thermophilus LMG 18311	41.28	89.031	0.368
clpC	Streptococcus thermophilus LMD-9	41.346	88.889	0.368