Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SPSF3K_RS00970 Genome accession   NZ_CP025420
Coordinates   193484..194848 (+) Length   454 a.a.
NCBI ID   WP_003105352.1    Uniprot ID   A0A0E2UEM9
Organism   Streptococcus parauberis strain SPOF3K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 188484..199848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS00945 (SPSF3K_00196) - 188586..190370 (+) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  SPSF3K_RS00950 (SPSF3K_00197) - 190420..191679 (-) 1260 WP_004235131.1 NAD(P)H-dependent oxidoreductase -
  SPSF3K_RS00955 (SPSF3K_00198) - 191698..192300 (-) 603 WP_003104239.1 NADPH-dependent FMN reductase -
  SPSF3K_RS00960 (SPSF3K_00199) - 192480..192839 (+) 360 WP_004235135.1 YbaN family protein -
  SPSF3K_RS00965 (SPSF3K_00200) - 192998..193441 (+) 444 WP_004235137.1 dUTP diphosphatase -
  SPSF3K_RS00970 (SPSF3K_00201) radA 193484..194848 (+) 1365 WP_003105352.1 DNA repair protein RadA Machinery gene
  SPSF3K_RS00975 (SPSF3K_00202) - 194990..195487 (+) 498 WP_003104325.1 beta-class carbonic anhydrase -
  SPSF3K_RS00980 (SPSF3K_00203) - 195618..196328 (+) 711 WP_003105176.1 TIGR00266 family protein -
  SPSF3K_RS00985 (SPSF3K_00204) gltX 196523..197968 (+) 1446 WP_003103001.1 glutamate--tRNA ligase -
  SPSF3K_RS11280 (SPSF3K_00205) - 198106..198393 (+) 288 WP_233847628.1 hypothetical protein -
  SPSF3K_RS00990 (SPSF3K_00206) - 198474..199430 (+) 957 WP_233847631.1 histidine kinase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49684.04 Da        Isoelectric Point: 6.0999

>NTDB_id=261144 SPSF3K_RS00970 WP_003105352.1 193484..194848(+) (radA) [Streptococcus parauberis strain SPOF3K]
MAKKKATFVCQECGYQSPKYLGRCPNCSSWSSFVEEVEVKEVKNARVSMSGEKSKPIKLKDVDNIHYARTQTDMDEFNRV
LGGGVVPGSMILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMENVRVEVE
RIQPDFLIIDSIQTMMSPEISGIQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLSVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLQGIKIPSGIEVIGVATVGQVLNAVFSK

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=261144 SPSF3K_RS00970 WP_003105352.1 193484..194848(+) (radA) [Streptococcus parauberis strain SPOF3K]
ATGGCAAAGAAAAAGGCAACATTTGTCTGTCAGGAGTGTGGTTATCAGTCGCCTAAGTATTTGGGTCGCTGCCCTAACTG
CTCGTCTTGGTCGTCATTTGTTGAAGAAGTTGAAGTTAAGGAAGTCAAGAATGCGCGTGTTAGCATGTCTGGAGAGAAAT
CGAAACCGATTAAACTGAAAGATGTGGATAATATACACTATGCTCGCACTCAGACTGATATGGATGAGTTTAATCGTGTG
CTTGGTGGTGGTGTTGTTCCTGGTAGCATGATTCTAATTGGTGGTGATCCTGGGATAGGGAAGTCAACTTTGCTTTTACA
GGTATCGACCCAGTTAGCGAACAAGGGGACGGTTCTATATGTTTCTGGTGAGGAATCGGCAGAGCAAATTAAACTCCGTA
GTGAACGTCTTGGTGACATTGATAATGAATTCTATCTTTATGCTGAGACTAATATGGAAAATGTCCGTGTAGAGGTGGAA
CGGATTCAGCCTGATTTTTTAATTATTGACTCGATTCAAACGATGATGAGTCCAGAAATTTCTGGTATCCAAGGGTCTGT
TAGTCAGGTTAGAGAAGTTACTGCTGAATTGATGCAATTAGCCAAAACTAATAACATTGCCACCTTTATTGTTGGTCATG
TGACTAAGGAAGGGACTTTGGCAGGTCCACGGATGCTAGAACATATGGTGGATACGGTTCTCTATTTTGAAGGAGAAAGG
CATCATACATTCAGGATCCTAAGAGCTGTCAAAAATCGTTTTGGGTCGACTAATGAAATTGGTATCTTTGAGATGCAATC
GGCTGGTTTAGTAGAAGTGCTTAATCCTAGCCAAGTATTCTTAGAAGAACGTTTGGATGGAGCTACTGGTTCTGCCATTG
TCGTCACAATGGAAGGTAGTCGGCCAATTCTTGCAGAGGTGCAATCACTTGTAACACCAACCGTATTTGGTAATGCCAGA
CGGACGACAACGGGTTTGGATTTTAACAGGGTCAGTTTGATTATGGCTGTTTTGGAAAAACGCTGTGGACTTCTCCTGCA
AAATCAGGACGCCTATCTCAAGTCTGCTGGGGGAGTCAAGCTTGATGAACCAGCTATTGACCTTTCTGTAGCGGTAGCCA
TTGCGTCCAGCTATAAGGAAAAGCCGACTAATCCTCAAGAAGCTTTCTTAGGTGAGATAGGTTTGACGGGAGAGATTCGT
CGAGTGACGCGAATTGAACAGCGGATAAATGAGGCAGCCAAATTAGGCTTTACGAAGGTTTATGCGCCTAAGAACTCTTT
ACAAGGGATTAAAATTCCTAGTGGTATTGAAGTTATTGGGGTAGCAACAGTAGGACAAGTCCTAAATGCTGTATTTTCGA
AATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(72-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2UEM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

86.534

99.78

0.863
  radA Streptococcus pneumoniae D39

86.534

99.78

0.863
  radA Streptococcus pneumoniae R6

86.534

99.78

0.863
  radA Streptococcus pneumoniae TIGR4

86.534

99.78

0.863
  radA Streptococcus mitis NCTC 12261

86.534

99.78

0.863
  radA Streptococcus mitis SK321

86.534

99.78

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

61.283

99.559

0.61

Multiple sequence alignment