Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPSF3K_RS00545 Genome accession   NZ_CP025420
Coordinates   99788..100501 (-) Length   237 a.a.
NCBI ID   WP_037620338.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 94788..105501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS11145 (SPSF3K_00108) - 95241..95390 (+) 150 WP_003108936.1 hypothetical protein -
  SPSF3K_RS00515 (SPSF3K_00109) - 95414..96376 (+) 963 WP_003108938.1 Gfo/Idh/MocA family protein -
  SPSF3K_RS00520 (SPSF3K_00110) - 96357..96851 (+) 495 WP_003108940.1 GNAT family N-acetyltransferase -
  SPSF3K_RS00525 (SPSF3K_00111) nrdG 96866..97480 (+) 615 WP_003104313.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SPSF3K_RS00530 (SPSF3K_00112) yaaA 97598..98329 (-) 732 WP_003108941.1 peroxide stress protein YaaA -
  SPSF3K_RS00535 (SPSF3K_00113) - 98382..99236 (-) 855 WP_003108943.1 VOC family protein -
  SPSF3K_RS00540 (SPSF3K_00114) - 99438..99764 (+) 327 WP_003108945.1 winged helix-turn-helix transcriptional regulator -
  SPSF3K_RS00545 (SPSF3K_00115) treR 99788..100501 (-) 714 WP_037620338.1 trehalose operon repressor Regulator
  SPSF3K_RS00550 (SPSF3K_00116) treP 100723..102732 (+) 2010 WP_003108947.1 PTS system trehalose-specific EIIBC component -
  SPSF3K_RS00555 (SPSF3K_00117) treC 102800..104425 (+) 1626 WP_003105838.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27687.92 Da        Isoelectric Point: 8.0440

>NTDB_id=261142 SPSF3K_RS00545 WP_037620338.1 99788..100501(-) (treR) [Streptococcus parauberis strain SPOF3K]
MKKYERIFKDLEEKIAKEIYAIDDFLPTEIELCKEYDASRDTIRKSLNLLAKAGLVKSQQGRGTQVIKHHQILFPISELT
SYHELVSYFNMDSKTNVIAIDKLIVDKYVSKLTGFKENTIIWRITRQRVVDGVASVLDIDYLNKDIVPTISREIAEVSLY
QYLEKELHLPIDFALKEVTIDQINDRDKILLDLGSDKHVVSVKSKVYLSNNEQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=261142 SPSF3K_RS00545 WP_037620338.1 99788..100501(-) (treR) [Streptococcus parauberis strain SPOF3K]
ATGAAAAAATATGAACGCATTTTCAAAGATTTAGAAGAAAAAATTGCCAAAGAAATTTATGCTATTGATGACTTTTTACC
AACTGAAATTGAACTCTGTAAAGAGTATGATGCAAGTAGAGATACTATTCGTAAGTCACTGAACCTTCTAGCGAAAGCTG
GACTAGTTAAAAGCCAACAAGGTCGTGGAACTCAAGTCATCAAACACCATCAAATATTATTCCCCATTTCTGAATTAACG
AGTTATCATGAGTTAGTTTCCTACTTCAATATGGATTCGAAAACAAATGTTATTGCTATTGATAAATTAATTGTAGACAA
ATATGTTTCAAAATTAACTGGCTTCAAAGAAAATACAATTATCTGGCGAATCACCCGTCAGCGTGTTGTTGATGGCGTTG
CCTCAGTTTTAGACATTGATTACTTGAATAAGGATATAGTCCCTACAATCTCAAGAGAAATTGCTGAAGTATCACTTTAT
CAATATTTGGAGAAAGAACTCCACTTACCAATTGATTTTGCCTTAAAAGAAGTTACAATTGACCAAATCAATGATCGGGA
TAAAATTTTACTAGATTTAGGATCTGACAAACATGTTGTCTCTGTGAAATCAAAAGTCTATTTGTCAAATAATGAACAAT
TCCAATTTACAGAAAGCCGGCATAAATTAGAAAAATTCAAATTTGTTGACTTTGCCAGACGAAATCCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.156

0.641

Multiple sequence alignment