Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CWE28_RS20275 Genome accession   NZ_CP030861
Coordinates   4224287..4224781 (+) Length   164 a.a.
NCBI ID   WP_003292123.1    Uniprot ID   A0ABY1WHY7
Organism   Pseudomonas aeruginosa strain HS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4219287..4229781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWE28_RS20260 (CWE28_20255) - 4220012..4220446 (+) 435 WP_023093111.1 TIGR03751 family conjugal transfer lipoprotein -
  CWE28_RS20265 (CWE28_20260) - 4220446..4223334 (+) 2889 WP_023115028.1 conjugative transfer ATPase -
  CWE28_RS20270 (CWE28_20265) - 4223348..4224091 (+) 744 WP_013721894.1 thioredoxin domain-containing protein -
  CWE28_RS20275 (CWE28_20270) radC 4224287..4224781 (+) 495 WP_003292123.1 DNA repair protein RadC Machinery gene
  CWE28_RS20280 (CWE28_20275) - 4224946..4225395 (+) 450 WP_023115029.1 TIGR03757 family integrating conjugative element protein -
  CWE28_RS20285 (CWE28_20280) - 4225392..4226336 (+) 945 WP_023115030.1 TIGR03756 family integrating conjugative element protein -
  CWE28_RS20290 (CWE28_20285) - 4226347..4227753 (+) 1407 WP_023115031.1 integrating conjugative element protein -
  CWE28_RS20295 (CWE28_20290) - 4227750..4228103 (+) 354 WP_023115032.1 hypothetical protein -
  CWE28_RS20300 (CWE28_20295) - 4228119..4229642 (+) 1524 WP_058132846.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17848.54 Da        Isoelectric Point: 6.6460

>NTDB_id=261121 CWE28_RS20275 WP_003292123.1 4224287..4224781(+) (radC) [Pseudomonas aeruginosa strain HS9]
MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=261121 CWE28_RS20275 WP_003292123.1 4224287..4224781(+) (radC) [Pseudomonas aeruginosa strain HS9]
ATGTCTCTTGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCAGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTTGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCACCCCTCGGGGAACACCGAGCCCTCGGCCGCCGATCGTGCGATCACCGAGCGGCTGA
AGAGCGCCCTGGCGACCGTCGATGTCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421