Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APECO1_RS20785 Genome accession   NC_008563
Coordinates   4103215..4103883 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli APEC O1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4098215..4108883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO1_RS20755 (APECO1_2826) rfaQ 4098393..4099451 (-) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -
  APECO1_RS20760 (APECO1_2825) waaA 4099864..4101141 (+) 1278 WP_000891546.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  APECO1_RS20765 coaD 4101149..4101628 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  APECO1_RS20770 (APECO1_2824) mutM 4101667..4102476 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  APECO1_RS20775 rpmG 4102574..4102741 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  APECO1_RS20780 rpmB 4102762..4102998 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  APECO1_RS20785 (APECO1_2823) radC 4103215..4103883 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  APECO1_RS20790 (APECO1_2822) coaBC 4104055..4105275 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  APECO1_RS20795 (APECO1_2821) dut 4105253..4105711 (+) 459 WP_000976066.1 dUTP diphosphatase -
  APECO1_RS20800 (APECO1_2820) slmA 4105818..4106414 (+) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  APECO1_RS20805 (APECO1_2819) pyrE 4106451..4107092 (-) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  APECO1_RS20810 (APECO1_2818) rph 4107158..4107874 (-) 717 WP_001247093.1 ribonuclease PH -
  APECO1_RS20815 (APECO1_2817) yicC 4108001..4108864 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=26108 APECO1_RS20785 WP_001297375.1 4103215..4103883(-) (radC) [Escherichia coli APEC O1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=26108 APECO1_RS20785 WP_001297375.1 4103215..4103883(-) (radC) [Escherichia coli APEC O1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment