Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CWE28_RS10275 Genome accession   NZ_CP030861
Coordinates   2087734..2088099 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain HS9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2082734..2093099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWE28_RS10260 (CWE28_10255) pilK 2084078..2084953 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  CWE28_RS10265 (CWE28_10260) pilJ 2085014..2087062 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  CWE28_RS10270 (CWE28_10265) - 2087147..2087683 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  CWE28_RS10275 (CWE28_10270) pilH 2087734..2088099 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  CWE28_RS10280 (CWE28_10275) pilG 2088146..2088553 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  CWE28_RS10285 (CWE28_10280) gshB 2088808..2089761 (+) 954 WP_003100943.1 glutathione synthase -
  CWE28_RS10290 (CWE28_10285) - 2089908..2090801 (+) 894 WP_003084580.1 TonB family protein -
  CWE28_RS10295 (CWE28_10290) - 2090850..2091419 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  CWE28_RS10300 (CWE28_10295) ruvX 2091419..2091853 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  CWE28_RS10305 (CWE28_10300) pyrR 2091965..2092477 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=261071 CWE28_RS10275 WP_003084587.1 2087734..2088099(-) (pilH) [Pseudomonas aeruginosa strain HS9]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=261071 CWE28_RS10275 WP_003084587.1 2087734..2088099(-) (pilH) [Pseudomonas aeruginosa strain HS9]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364