Detailed information NTG0261059

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CWE28_RS05020
• Genome accession: NZ_CP030861
• Coordinates: 1006084..1007088 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain HS9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1001084..1012088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWE28_RS05000 (CWE28_04995)	-	1001435..1001644 (+)	210	WP_071538228.1	DUF4224 domain-containing protein	-
CWE28_RS05005 (CWE28_05000)	-	1001654..1002628 (+)	975	WP_023114620.1	tyrosine-type recombinase/integrase	-
CWE28_RS05010 (CWE28_05005)	mutS	1002688..1005267 (+)	2580	WP_079279453.1	DNA mismatch repair protein MutS	-
CWE28_RS05015 (CWE28_05010)	fdxA	1005334..1005657 (+)	324	WP_003092272.1	ferredoxin FdxA	-
CWE28_RS05020 (CWE28_05015)	rpoS	1006084..1007088 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CWE28_RS05025 (CWE28_05020)	-	1007193..1008086 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
CWE28_RS05030 (CWE28_05025)	-	1008132..1008767 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CWE28_RS05035 (CWE28_05030)	surE	1008800..1009549 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CWE28_RS05040 (CWE28_05035)	truD	1009537..1010604 (-)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
CWE28_RS05045 (CWE28_05040)	ispF	1010601..1011074 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CWE28_RS05050 (CWE28_05045)	fghA	1011145..1011996 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=261059 CWE28_RS05020 WP_003113871.1 1006084..1007088(-) (rpoS) [Pseudomonas aeruginosa strain HS9]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=261059 CWE28_RS05020 WP_003113871.1 1006084..1007088(-) (rpoS) [Pseudomonas aeruginosa strain HS9]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653