Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   CWE28_RS01325 Genome accession   NZ_CP030861
Coordinates   258097..258453 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain HS9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253097..263453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWE28_RS01300 (CWE28_01295) - 253481..254113 (-) 633 WP_023114516.1 DUF4823 domain-containing protein -
  CWE28_RS01305 (CWE28_01300) - 254178..255073 (-) 896 Protein_255 radical SAM protein -
  CWE28_RS01310 (CWE28_01305) - 255223..255861 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  CWE28_RS01315 (CWE28_01310) - 255947..257080 (+) 1134 WP_023114517.1 aminotransferase class V-fold PLP-dependent enzyme -
  CWE28_RS01320 (CWE28_01315) - 257306..258082 (-) 777 WP_003091117.1 TatD family hydrolase -
  CWE28_RS01325 (CWE28_01320) pilZ 258097..258453 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  CWE28_RS01330 (CWE28_01325) - 258487..259473 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  CWE28_RS01335 (CWE28_01330) tmk 259466..260098 (-) 633 WP_003091125.1 dTMP kinase -
  CWE28_RS01340 (CWE28_01335) mltG 260127..261176 (-) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  CWE28_RS01345 (CWE28_01340) pabC 261182..261997 (-) 816 WP_003110198.1 aminodeoxychorismate lyase -
  CWE28_RS01350 (CWE28_01345) fabF 261997..263241 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=261046 CWE28_RS01325 WP_003091119.1 258097..258453(-) (pilZ) [Pseudomonas aeruginosa strain HS9]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=261046 CWE28_RS01325 WP_003091119.1 258097..258453(-) (pilZ) [Pseudomonas aeruginosa strain HS9]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAATGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449