Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   CR921_RS08035 Genome accession   NZ_CP025399
Coordinates   1535072..1536148 (-) Length   358 a.a.
NCBI ID   WP_198553228.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain GABA     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530072..1541148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS08015 - 1531184..1533250 (-) 2067 WP_101415689.1 cation:proton antiporter -
  CR921_RS08020 - 1533259..1533501 (-) 243 WP_011226461.1 hypothetical protein -
  CR921_RS08025 - 1533498..1534046 (-) 549 WP_101415690.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  CR921_RS08030 - 1534043..1534987 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  CR921_RS08035 sepM 1535072..1536148 (-) 1077 WP_198553228.1 SepM family pheromone-processing serine protease Regulator
  CR921_RS08040 coaD 1536126..1536623 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  CR921_RS08045 rsmD 1536657..1537256 (-) 600 Protein_1507 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CR921_RS08050 trxB 1537347..1538300 (-) 954 WP_259700003.1 thioredoxin-disulfide reductase -
  CR921_RS08055 - 1538333..1538557 (-) 225 WP_002951743.1 DUF4059 family protein -
  CR921_RS08060 - 1538772..1539515 (-) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein -
  CR921_RS08065 - 1539515..1540261 (-) 747 WP_095559509.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39186.09 Da        Isoelectric Point: 9.4944

>NTDB_id=260949 CR921_RS08035 WP_198553228.1 1535072..1536148(-) (sepM) [Streptococcus thermophilus strain GABA]
MANKTKSKALLEKMWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVNKKADDSKGSYNFVAVAQTKAT
LALMLYAQFNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAVYQGLTLAGKEVSLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGKTFDNSTDMIKYVQGLKLGSKVKVTYMRDGKEKTATGKIIKIANGKNGIGIGLTDHTEIKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNLVTKEMKKADPD
AKTNYQEAKEAAEKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=260949 CR921_RS08035 WP_198553228.1 1535072..1536148(-) (sepM) [Streptococcus thermophilus strain GABA]
GTGGCAAACAAGACAAAATCTAAAGCGCTATTAGAGAAAATGTGGCGTATTAAGTGGTGGTTATTAAGTATTTTTACGGT
ACTTTTCCTCCTTTTTGCCCTCTTTTTCCCGCTCAATAATTACTATGTGGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACAGTGAATAAGAAAGCTGATGATTCTAAGGGCTCCTATAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGTTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGCATCAACCAATTTTACATGGAGACTTCTCAAAACCAAGCGGTTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGTTAGTTTGGAGTATATGGGTGTCTATGTGCTTCAGGTTGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCTGATACGGTGACGGCTGTTAATGGTAAGACCTTTGATAATTCTACTGACATGATTAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAGGTCAAGGTCACTTATATGAGAGATGGCAAAGAAAAGACTGCTACTGGTAAGATTATTAAGATTGCCA
ATGGCAAAAATGGTATTGGTATCGGCCTAACGGACCATACTGAGATCAAGAGTCCTGAGAATGTTAAGTTTAAACTGGAT
GGTGTCGGTGGGCCAAGTGCTGGTCTTATGTTTACCTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGCAAGATTGCTGGTACAGGAACTATTGAAAAAGATGGGGCTGTCGGTGATATCGGTGGGGCCTATCTCAAGGTGAAAT
CTGCGGCTGATAGTGGCGCAGACATTTTCTTCGTGCCAAATAATCTAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAATTATCAAGAGGCCAAGGAAGCTGCCGAGAAACTGGGGACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATGA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(137-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

63.05

95.251

0.601

Multiple sequence alignment