Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CR921_RS02265 Genome accession   NZ_CP025399
Coordinates   410392..410835 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain GABA     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 405392..415835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS02245 - 405905..406666 (-) 762 WP_064355432.1 NUDIX domain-containing protein -
  CR921_RS02250 - 406730..407836 (-) 1107 WP_024009756.1 AAA family ATPase -
  CR921_RS02255 gdhA 408180..409532 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  CR921_RS02260 - 409791..410201 (+) 411 WP_011680804.1 peptide deformylase -
  CR921_RS02265 rcrR 410392..410835 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  CR921_RS02270 rcrP 410839..412653 (+) 1815 WP_024704204.1 ABC transporter ATP-binding protein Regulator
  CR921_RS02275 rcrQ 412643..414421 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  CR921_RS02280 - 414577..414834 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=260918 CR921_RS02265 WP_002945408.1 410392..410835(+) (rcrR) [Streptococcus thermophilus strain GABA]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=260918 CR921_RS02265 WP_002945408.1 410392..410835(+) (rcrR) [Streptococcus thermophilus strain GABA]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment