Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APECO1_RS17075 Genome accession   NC_008563
Coordinates   3355841..3356317 (+) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli APEC O1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3350841..3361317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO1_RS17040 (APECO1_3493) - 3351511..3352395 (+) 885 WP_000010416.1 GTPase family protein -
  APECO1_RS17050 (APECO1_3492) - 3352598..3353278 (+) 681 WP_001282926.1 YafY family protein -
  APECO1_RS17055 (APECO1_3491) - 3353426..3354103 (+) 678 WP_001097312.1 hypothetical protein -
  APECO1_RS17060 - 3354109..3354342 (+) 234 WP_001278287.1 DUF905 family protein -
  APECO1_RS17065 (APECO1_3490) - 3354432..3355250 (+) 819 WP_001175142.1 DUF932 domain-containing protein -
  APECO1_RS17070 (APECO1_3489) - 3355341..3355826 (+) 486 WP_000860054.1 antirestriction protein -
  APECO1_RS17075 (APECO1_3488) radC 3355841..3356317 (+) 477 WP_001186756.1 RadC family protein Machinery gene
  APECO1_RS17080 - 3356386..3356607 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  APECO1_RS17085 (APECO1_3487) cbeA 3356686..3357063 (+) 378 WP_015953067.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  APECO1_RS17090 (APECO1_3486) - 3357110..3357487 (+) 378 WP_001094436.1 TA system toxin CbtA family protein -
  APECO1_RS17095 (APECO1_3485) - 3357484..3357972 (+) 489 WP_000761714.1 DUF5983 family protein -
  APECO1_RS17100 - 3357984..3358181 (+) 198 WP_000839254.1 DUF957 domain-containing protein -
  APECO1_RS17105 (APECO1_3484) - 3358266..3359111 (+) 846 WP_001280513.1 DUF4942 domain-containing protein -
  APECO1_RS17110 (APECO1_3483) - 3359182..3360717 (+) 1536 WP_000492897.1 EAL domain-containing protein -
  APECO1_RS17115 - 3361114..3361284 (+) 171 Protein_3289 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=26091 APECO1_RS17075 WP_001186756.1 3355841..3356317(+) (radC) [Escherichia coli APEC O1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=26091 APECO1_RS17075 WP_001186756.1 3355841..3356317(+) (radC) [Escherichia coli APEC O1]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment