Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECP_RS04865 Genome accession   NC_008253
Coordinates   1024511..1025140 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli 536     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019511..1030140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECP_RS04840 (ECP_0960) ycbZ 1019913..1021673 (-) 1761 WP_000156496.1 AAA family ATPase -
  ECP_RS04845 (ECP_0961) matP 1021859..1022311 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  ECP_RS04850 (ECP_0962) ompA 1022387..1023427 (-) 1041 WP_001313715.1 porin OmpA -
  ECP_RS04860 (ECP_0964) sulA 1023783..1024292 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ECP_RS04865 (ECP_0965) sxy/tfoX 1024511..1025140 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECP_RS04870 (ECP_0966) yccS 1025103..1027265 (-) 2163 WP_000875067.1 YccS family putative transporter -
  ECP_RS04875 (ECP_0967) yccF 1027275..1027721 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECP_RS04880 (ECP_0968) helD 1027844..1029898 (+) 2055 WP_001541157.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=26091 ECP_RS04865 WP_000839153.1 1024511..1025140(+) (sxy/tfoX) [Escherichia coli 536]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=26091 ECP_RS04865 WP_000839153.1 1024511..1025140(+) (sxy/tfoX) [Escherichia coli 536]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment