Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | CYD28_RS06660 | Genome accession | NZ_CP025396 |
| Coordinates | 1371696..1372670 (+) | Length | 324 a.a. |
| NCBI ID | WP_011275668.1 | Uniprot ID | - |
| Organism | Staphylococcus haemolyticus strain B | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1366696..1377670
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYD28_RS06625 (CYD28_06625) | rpmG | 1367128..1367277 (+) | 150 | WP_011275661.1 | 50S ribosomal protein L33 | - |
| CYD28_RS06630 (CYD28_06630) | - | 1367514..1368050 (+) | 537 | WP_011275662.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| CYD28_RS06635 (CYD28_06635) | - | 1368066..1369523 (+) | 1458 | WP_011275663.1 | rhomboid family protein | - |
| CYD28_RS06640 (CYD28_06640) | - | 1369507..1369710 (+) | 204 | WP_011275664.1 | YqgQ family protein | - |
| CYD28_RS06645 (CYD28_06645) | - | 1369707..1370693 (+) | 987 | WP_011275665.1 | ROK family glucokinase | - |
| CYD28_RS06650 (CYD28_06650) | - | 1370693..1371016 (+) | 324 | WP_011275666.1 | MTH1187 family thiamine-binding protein | - |
| CYD28_RS06655 (CYD28_06655) | - | 1371018..1371644 (+) | 627 | WP_011275667.1 | MBL fold metallo-hydrolase | - |
| CYD28_RS06660 (CYD28_06660) | comGA | 1371696..1372670 (+) | 975 | WP_011275668.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CYD28_RS06665 (CYD28_06665) | comGB | 1372642..1373706 (+) | 1065 | WP_011275669.1 | competence type IV pilus assembly protein ComGB | - |
| CYD28_RS06670 (CYD28_06670) | comGC | 1373720..1374040 (+) | 321 | WP_011275670.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CYD28_RS06675 (CYD28_06675) | comGD | 1374105..1374473 (+) | 369 | WP_123955564.1 | competence type IV pilus minor pilin ComGD | - |
| CYD28_RS13255 | - | 1374671..1374811 (+) | 141 | Protein_1290 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CYD28_RS13030 | - | 1374911..1375162 (+) | 252 | WP_238324298.1 | hypothetical protein | - |
| CYD28_RS06695 (CYD28_06695) | - | 1375322..1375840 (+) | 519 | WP_011275674.1 | shikimate kinase | - |
| CYD28_RS06700 (CYD28_06700) | gcvT | 1376029..1377120 (+) | 1092 | WP_033079984.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37137.14 Da Isoelectric Point: 8.6557
>NTDB_id=260887 CYD28_RS06660 WP_011275668.1 1371696..1372670(+) (comGA) [Staphylococcus haemolyticus strain B]
MKLLFREIVNKAISKNASDIHFIPTVDEVHIKFRINDYLELYEIFNLDVYQKLLVFMKFKSGLDVSSHQSAQSGRYTYQA
KSTFYLRISTLPLSLGIESCVIRIIPQYFQAKKEYKEFNDFKHLVNKKQGLILLTGPTGSGKSTLMYQMVLHAYKELNLN
VITIENPVEQLLKGITQISINKKAGIDYVSSFKAILRCDPDIILIGEIRDAEVAKCVIQASLSGHLVLSTMHSTNCRGAL
LRLLEMGISIQELTQSINIISNQRLITTTQNERRLICETIDKKQIQFFFEHEQTMPHNFNNLQQQLNLLSKEGTICEDTA
SKYF
MKLLFREIVNKAISKNASDIHFIPTVDEVHIKFRINDYLELYEIFNLDVYQKLLVFMKFKSGLDVSSHQSAQSGRYTYQA
KSTFYLRISTLPLSLGIESCVIRIIPQYFQAKKEYKEFNDFKHLVNKKQGLILLTGPTGSGKSTLMYQMVLHAYKELNLN
VITIENPVEQLLKGITQISINKKAGIDYVSSFKAILRCDPDIILIGEIRDAEVAKCVIQASLSGHLVLSTMHSTNCRGAL
LRLLEMGISIQELTQSINIISNQRLITTTQNERRLICETIDKKQIQFFFEHEQTMPHNFNNLQQQLNLLSKEGTICEDTA
SKYF
Nucleotide
Download Length: 975 bp
>NTDB_id=260887 CYD28_RS06660 WP_011275668.1 1371696..1372670(+) (comGA) [Staphylococcus haemolyticus strain B]
TTGAAACTATTATTCAGAGAGATAGTTAATAAAGCTATTTCAAAAAATGCGAGTGACATACATTTTATTCCTACAGTTGA
TGAAGTTCATATTAAATTTAGAATTAATGATTACCTTGAACTTTATGAAATATTCAACTTAGATGTATATCAAAAATTAT
TAGTATTTATGAAGTTCAAATCAGGTTTGGACGTTTCATCTCATCAATCCGCTCAAAGTGGTCGTTATACTTATCAAGCT
AAATCTACTTTTTATTTACGGATTTCAACATTACCTTTGTCTTTAGGTATAGAAAGTTGTGTAATTAGGATAATTCCTCA
ATATTTTCAAGCAAAAAAAGAATATAAAGAATTTAACGATTTTAAACACTTAGTAAATAAAAAACAGGGATTAATTCTAT
TAACTGGACCCACAGGATCCGGAAAAAGCACTCTGATGTATCAAATGGTTCTACATGCATATAAAGAATTAAATCTTAAT
GTCATCACTATCGAAAACCCAGTTGAGCAATTACTAAAGGGAATTACTCAAATATCAATTAATAAAAAAGCAGGTATCGA
CTACGTAAGTTCATTTAAAGCTATATTAAGATGTGATCCTGATATTATTTTAATAGGTGAAATAAGAGACGCAGAAGTTG
CTAAATGTGTAATTCAAGCTAGTTTGAGTGGACATCTTGTATTATCAACTATGCATTCCACTAATTGTAGAGGTGCATTA
CTTCGATTACTTGAGATGGGAATTTCAATTCAAGAATTAACTCAATCGATCAATATCATTTCTAATCAAAGATTAATAAC
GACTACTCAGAATGAGCGTCGCTTAATTTGTGAAACAATAGATAAAAAGCAGATACAATTTTTCTTCGAGCATGAACAAA
CAATGCCACATAATTTTAATAATTTACAACAGCAATTAAATTTATTATCTAAAGAAGGAACAATTTGTGAAGATACTGCA
AGTAAATATTTTTAA
TTGAAACTATTATTCAGAGAGATAGTTAATAAAGCTATTTCAAAAAATGCGAGTGACATACATTTTATTCCTACAGTTGA
TGAAGTTCATATTAAATTTAGAATTAATGATTACCTTGAACTTTATGAAATATTCAACTTAGATGTATATCAAAAATTAT
TAGTATTTATGAAGTTCAAATCAGGTTTGGACGTTTCATCTCATCAATCCGCTCAAAGTGGTCGTTATACTTATCAAGCT
AAATCTACTTTTTATTTACGGATTTCAACATTACCTTTGTCTTTAGGTATAGAAAGTTGTGTAATTAGGATAATTCCTCA
ATATTTTCAAGCAAAAAAAGAATATAAAGAATTTAACGATTTTAAACACTTAGTAAATAAAAAACAGGGATTAATTCTAT
TAACTGGACCCACAGGATCCGGAAAAAGCACTCTGATGTATCAAATGGTTCTACATGCATATAAAGAATTAAATCTTAAT
GTCATCACTATCGAAAACCCAGTTGAGCAATTACTAAAGGGAATTACTCAAATATCAATTAATAAAAAAGCAGGTATCGA
CTACGTAAGTTCATTTAAAGCTATATTAAGATGTGATCCTGATATTATTTTAATAGGTGAAATAAGAGACGCAGAAGTTG
CTAAATGTGTAATTCAAGCTAGTTTGAGTGGACATCTTGTATTATCAACTATGCATTCCACTAATTGTAGAGGTGCATTA
CTTCGATTACTTGAGATGGGAATTTCAATTCAAGAATTAACTCAATCGATCAATATCATTTCTAATCAAAGATTAATAAC
GACTACTCAGAATGAGCGTCGCTTAATTTGTGAAACAATAGATAAAAAGCAGATACAATTTTTCTTCGAGCATGAACAAA
CAATGCCACATAATTTTAATAATTTACAACAGCAATTAAATTTATTATCTAAAGAAGGAACAATTTGTGAAGATACTGCA
AGTAAATATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
65.325 |
99.691 |
0.651 |
| comGA | Staphylococcus aureus N315 |
65.325 |
99.691 |
0.651 |