Detailed information NTG0026087

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: APECO1_RS15600
• Genome accession: NC_008563
• Coordinates: 3043321..3044313 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli APEC O1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3038321..3049313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APECO1_RS15580 (APECO1_3785)	ygbM	3038952..3039728 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
APECO1_RS15585 (APECO1_37842)	ygbN	3039817..3041181 (+)	1365	WP_000104443.1	GntP family transporter	-
APECO1_RS15590 (APECO1_3784)	-	3041324..3042367 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
APECO1_RS15595 (APECO1_3783)	-	3042592..3043143 (+)	552	WP_001179442.1	flavodoxin family protein	-
APECO1_RS15600 (APECO1_3782)	rpoS	3043321..3044313 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
APECO1_RS15605 (APECO1_3781)	nlpD	3044376..3045470 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
APECO1_RS15610 (APECO1_3780)	pcm	3045655..3046281 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
APECO1_RS15615 (APECO1_3779)	surE	3046275..3047036 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
APECO1_RS15620 (APECO1_3778)	truD	3047017..3048066 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
APECO1_RS15625 (APECO1_3777)	ispF	3048063..3048542 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
APECO1_RS15630 (APECO1_3776)	ispD	3048542..3049252 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=26087 APECO1_RS15600 WP_000081550.1 3043321..3044313(-) (rpoS) [Escherichia coli APEC O1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=26087 APECO1_RS15600 WP_000081550.1 3043321..3044313(-) (rpoS) [Escherichia coli APEC O1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715