Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HAC_RS00860 Genome accession   NC_008229
Coordinates   163457..164773 (+) Length   438 a.a.
NCBI ID   WP_011577161.1    Uniprot ID   -
Organism   Helicobacter acinonychis str. Sheeba     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 158457..169773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAC_RS00840 (Hac_0190) crdR 158782..159423 (+) 642 WP_011577157.1 copper response regulator transcription factor CrdR -
  HAC_RS00845 (Hac_0191) crdS 159404..160591 (+) 1188 WP_104687346.1 copper-sensing histidine kinase CrdS -
  HAC_RS00850 (Hac_0192) - 160594..161988 (+) 1395 WP_011577159.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HAC_RS00855 (Hac_0193) - 162000..163460 (+) 1461 WP_011577160.1 replicative DNA helicase -
  HAC_RS00860 (Hac_0194) comEC/comE3 163457..164773 (+) 1317 WP_011577161.1 ComEC/Rec2 family competence protein Machinery gene
  HAC_RS00865 (Hac_0195) mqnP 164895..165728 (+) 834 WP_231899505.1 menaquinone biosynthesis prenyltransferase MqnP -
  HAC_RS00870 (Hac_0196) - 165721..166215 (+) 495 WP_050711590.1 hypothetical protein -
  HAC_RS00875 (Hac_0197) - 166228..166734 (+) 507 WP_011577164.1 DUF6115 domain-containing protein -
  HAC_RS00880 (Hac_0198) - 166728..167531 (+) 804 WP_011577165.1 phosphatidylserine decarboxylase -
  HAC_RS00885 (Hac_0199) nadA 167521..168531 (+) 1011 WP_011577166.1 quinolinate synthase NadA -
  HAC_RS00890 (Hac_0200) nadC 168531..169352 (+) 822 WP_011577167.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 50372.24 Da        Isoelectric Point: 9.7270

>NTDB_id=26067 HAC_RS00860 WP_011577161.1 163457..164773(+) (comEC/comE3) [Helicobacter acinonychis str. Sheeba]
MKDKTFQGAFDILSSPKEYLWCGVVLSLLFVINLYAEYLNYQKLDFSKPTSLDAQILLQYPKTNNQKSYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAHFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRNLIDSVHENALVGNLYRALFIGDSL
NKDLRDKANTLGINHLLAISGFHLGVLSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFMLGYLVLLDFLPSFFRA
FLMGLLGFLACFFGARILNFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHAKVFFKNSSFLMRSFQAISLS
VLVFSNMLIVVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDQILSMPLEIPTISIFSPLWLLGVHFFLT
ILSVRFFKVYLSMNVLSMGFFLYCCYQYTIMPSLIVGG

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=26067 HAC_RS00860 WP_011577161.1 163457..164773(+) (comEC/comE3) [Helicobacter acinonychis str. Sheeba]
TTGAAAGATAAAACCTTTCAAGGGGCGTTTGATATTCTTTCAAGCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTTGTCATTAACCTCTATGCAGAATACTTGAATTATCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGGACG
CTCAAATCTTATTGCAATACCCTAAGACAAACAATCAAAAATCCTATTTCGTTTTAAAGCTCCAATCTAAAGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACATTTTTTTGGCAAGATCAAGCCTTGCTC
GTTTTTAGAATCGTTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCCCACT
TACGCAACTTAATTGATAGCGTCCATGAAAACGCTTTAGTGGGCAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAAAGCCAACACGCTAGGGATCAACCACTTATTAGCCATTAGCGGGTTTCATTTAGGGGTTTT
GAGCGCGAGCGTTTATTTTCTTTTCTCTCTTTTTTATACTCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTTTGGGTTTTTATGCTAGGGTATTTAGTGCTATTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGCTTACTAGGGTTTTTGGCATGCTTTTTTGGGGCAAGGATTTTAAATTTTAAACTTTTGATTTTAGCGTG
TTGTATCGCTATTGCCCTGCTTCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACATGCCAAAGTTTTTTTTAAAAACTCTTCTTTTTTGATGCGATCGTTTCAAGCCATAAGCTTGAGC
GTGTTGGTGTTTTCAAACATGCTCATTGTTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTTTTTAGCATTCC
TTTAGGTTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTAGGTTTGGGGTCTTTATTGGATCAAA
TTTTAAGCATGCCTTTAGAAATCCCCACGATCTCTATTTTTTCGCCCTTATGGCTTTTGGGGGTGCATTTCTTTTTAACG
ATTTTGAGCGTGCGATTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATACTATAATGCCTAGTTTAATTGTAGGGGGTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

89.703

99.772

0.895

Multiple sequence alignment