Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   DSB67_RS04120 Genome accession   NZ_CP030788
Coordinates   846483..849863 (+) Length   1126 a.a.
NCBI ID   WP_029388671.1    Uniprot ID   -
Organism   Vibrio campbellii strain DS40M4     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 841483..854863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS04095 (DSB67_04095) sucC 841576..842742 (+) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -
  DSB67_RS04100 (DSB67_04100) sucD 842742..843614 (+) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  DSB67_RS04105 (DSB67_04105) znuB 843744..844529 (-) 786 WP_005534223.1 zinc ABC transporter permease subunit ZnuB -
  DSB67_RS04110 (DSB67_04110) znuC 844522..845310 (-) 789 WP_010645542.1 zinc ABC transporter ATP-binding protein ZnuC -
  DSB67_RS04115 (DSB67_04115) znuA 845389..846270 (+) 882 WP_010645543.1 zinc ABC transporter substrate-binding protein ZnuA -
  DSB67_RS04120 (DSB67_04120) tfoS 846483..849863 (+) 3381 WP_029388671.1 AraC family transcriptional regulator Regulator
  DSB67_RS04125 (DSB67_04125) - 850626..850853 (+) 228 WP_005426705.1 FeoA family protein -
  DSB67_RS04130 (DSB67_04130) feoB 850853..853129 (+) 2277 WP_010645545.1 Fe(2+) transporter permease subunit FeoB -
  DSB67_RS04135 (DSB67_04135) - 853126..853356 (+) 231 WP_010645546.1 FeoC-like transcriptional regulator -
  DSB67_RS04140 (DSB67_04140) - 853466..853987 (-) 522 WP_010645547.1 YqhA family protein -
  DSB67_RS04145 (DSB67_04145) - 854138..854566 (-) 429 WP_005382194.1 HIT family protein -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126933.27 Da        Isoelectric Point: 6.0319

>NTDB_id=260533 DSB67_RS04120 WP_029388671.1 846483..849863(+) (tfoS) [Vibrio campbellii strain DS40M4]
MLRQIALLFWAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGAQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGPDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQVTFPYLQVIAGKTIDHITADGPNRLWISSGYQLFNIDAVNQAMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTIPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVIQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLIGLDSR
FTVLKPWYLSKLAISVFTLAVIAVLALLTYSRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPSDVDSVTQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEITWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSP

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=260533 DSB67_RS04120 WP_029388671.1 846483..849863(+) (tfoS) [Vibrio campbellii strain DS40M4]
TTGCTGCGCCAAATAGCCCTACTTTTTTGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGCACTTTTATTGCAGCAAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGCCAAACCACATTGCCAAAATCCGGTAGCTTTCTCAGAAAC
AAAGTAGAGCAGTTGGCTTACCACAAAGGCTCATTTTGGACATTTATTGAAAACGAGGTGTATCAAACTTATCCGAACCA
AGAACGCCGTTTAGTCTTTAGCCTCAACCCAGGCTCTCAGATCCGTAAGATTGGCTCATCCGGGAACTATATTTGGGTCA
GTGATGGTGCGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTTTATTACAGCTCTATCAGCAT
AGCAACAACAGTTACGTCTATATTAATGACGCTATCTTTGTCGAAACCAAGTGGGCGTTGGCGACGACTTCAGGCGTATA
CCTATCAGAGGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATTGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTCGGCACTTTAAAAGGCGCGTTGATATTTAATATCTATGAGCCAGGCAAGCCTGTTATTCGAATT
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTGGAACTAGAGCTCGCCAGTACCAAAATTTACTCGT
TGCTGAACGATAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGTAGTTATGACCAACAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGGGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAACAATGGCAGCATTACCGATGTGTTGAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAAAGGCTCTGGGTTGCTACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGGTGACATTCCCTTACCTGCAAGTCATCGCAGGCAAGACAATCGATCATATTACCGCTGATGGCCCGAATCGCCT
TTGGATATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAACCAGGCTATGAGAAATTTTGGCAGCGAATGGTTAG
TGAGTAAGTTCTTACCCGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCATGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGCTCACAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCATTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTATCTGGGCAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAATGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTATCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGATTCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGGTCGTCCCTTAGTTTTCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGCGGGCAATTAACGTTAGAAC
ACCTTAATTCTGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTCTGATTGGATTAGATTCCAGA
TTTACAGTGCTTAAACCATGGTATCTATCGAAGTTGGCCATATCGGTTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAACGTACTCGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGCTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGCTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTAGTGATGTGGATTCGGTAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGCATTTCACTAGAGAGCTTCAACCTTGATGTCATTTTTAACAGCATCTTTGCCAACATCAT
CAAGCGATCGTTCCGGGGACAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGTCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGTCATTTATCGATGTTCACTTCTGATGCTCAAAATAAGATAGAGATTACGTGGCC
ATGTGCTCAAGAGCCAAGTCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCTGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGTG
GCTTCAATGACCCATCCTACTTTAGCCAGAAGTTTAAATTACACTTTGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCCATAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.308

100

0.393

Multiple sequence alignment