Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C9F11_RS30035 Genome accession   NZ_CP030771
Coordinates   6957309..6958094 (-) Length   261 a.a.
NCBI ID   WP_138962193.1    Uniprot ID   A0A918Z305
Organism   Streptomyces sp. YIM 121038     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6952309..6963094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS30025 (C9F11_29855) - 6952986..6954833 (+) 1848 WP_138962191.1 IucA/IucC family siderophore biosynthesis protein -
  C9F11_RS30030 (C9F11_29860) - 6954874..6956865 (+) 1992 WP_138962192.1 ATP-dependent DNA helicase -
  C9F11_RS30035 (C9F11_29865) dinR/lexA 6957309..6958094 (-) 786 WP_138962193.1 transcriptional repressor LexA Regulator
  C9F11_RS30040 (C9F11_29870) nrdR 6958611..6959165 (+) 555 WP_138962194.1 transcriptional regulator NrdR -
  C9F11_RS30045 (C9F11_29875) - 6959303..6962194 (+) 2892 WP_138962195.1 vitamin B12-dependent ribonucleotide reductase -
  C9F11_RS30050 (C9F11_29880) - 6962257..6962787 (-) 531 WP_138962196.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28318.04 Da        Isoelectric Point: 8.0891

>NTDB_id=260500 C9F11_RS30035 WP_138962193.1 6957309..6958094(-) (dinR/lexA) [Streptomyces sp. YIM 121038]
MTTTADSATITAQDRSRSRFEPVHAMNDAATNQEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQATDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=260500 C9F11_RS30035 WP_138962193.1 6957309..6958094(-) (dinR/lexA) [Streptomyces sp. YIM 121038]
GTGACCACCACCGCAGACAGCGCCACTATCACTGCCCAGGACCGCTCCCGGAGCCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGAACCAGGAGGGGCCCAAGCCCACTCGCTCCCTGCCGGGCCGACCTCCAGGAATCCGCGCCGACAGCT
CCGGGCTCACGGACCGCCAGCGCAGGGTGATCGAGGTCATCAGGGACTCGGTGCAGCGGCGTGGTTACCCGCCGTCGATG
CGGGAGATCGGGCAGGCGGTCGGCCTCTCCAGCACTTCTTCGGTGGCGCACCAGCTGATGGCTCTGGAGCGCAAGGGATT
CCTGCGCCGCGACCCGCACCGACCGCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCCAGCACCCAGGCCACCGACACGA
CGGGCAAGCCCGCCGCCTCGTACGTCCCCCTCGTCGGCCGCATCGCCGCGGGTGGTCCCATCCTCGCCGAGGAGTCCGTC
GAGGACGTGTTCCCCCTCCCCCGGCAGCTCGTCGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCCATGAT
CGAGGCCGCGATCTGCGACGGCGACTGGGTGACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCGCCA
TGCTCGACGGCGAAGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGACACGTCTGGCTGCTGCCCCACAACGCCGCGTAC
CAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTCCTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A918Z305

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375