Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   C9F11_RS24320 Genome accession   NZ_CP030771
Coordinates   5689354..5691210 (+) Length   618 a.a.
NCBI ID   WP_249401869.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5684354..5696210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS24305 (C9F11_24230) - 5685259..5686830 (+) 1572 WP_138961254.1 NADH-quinone oxidoreductase subunit M -
  C9F11_RS24310 (C9F11_24235) nuoN 5686827..5688476 (+) 1650 WP_138961255.1 NADH-quinone oxidoreductase subunit NuoN -
  C9F11_RS24315 (C9F11_24240) - 5688547..5689095 (-) 549 WP_138961256.1 hypothetical protein -
  C9F11_RS24320 (C9F11_24245) recQ 5689354..5691210 (+) 1857 WP_249401869.1 DNA helicase RecQ Machinery gene
  C9F11_RS24325 (C9F11_24250) fahA 5691253..5692572 (-) 1320 WP_138961257.1 fumarylacetoacetase -
  C9F11_RS24330 (C9F11_24255) - 5692785..5694065 (+) 1281 WP_138966943.1 ATP-grasp domain-containing protein -
  C9F11_RS24335 (C9F11_24260) - 5694267..5695469 (+) 1203 WP_138961258.1 FAD-dependent oxidoreductase -
  C9F11_RS24340 (C9F11_24265) - 5695564..5695818 (-) 255 WP_138961259.1 hypothetical protein -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 67209.59 Da        Isoelectric Point: 6.1399

>NTDB_id=260480 C9F11_RS24320 WP_249401869.1 5689354..5691210(+) (recQ) [Streptomyces sp. YIM 121038]
MTEVVESDALRTLHRVFGYDAFRGEQESIIEHVVAGGDAVVLMPTGGGKSLCYQIPALVRPGTGVVVSPLIALMQDQVDA
LRALGVRAGFMNSTQDFDERRLVEAELLSGELDVLYLAPERLRLDTTLHLLSRAKISVFAIDEAHCVAQWGHDFRPDYLA
LSVLGERWPDVPRIALTATATDATHREITERLAMPDAKHFVASFDRPNIQYRIVPKSDPKKQLLTFLKEEHDGDAGIVYC
LSRKSVEQIADFLSAHGVEAVPYHAGLDGGTRARHQSRFLREDGLVVVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQE
TGRAGRDGLPSTAWMAYGLQDVVQQRKLIQSGEGDEAFRRRSAAHLDAMLALCEAASCRRAQLLRYFGQDPTATGCGNCD
TCLTPPETWDGTVAAQKVLSAVVRLKRERGQKFGTGQIVDILLGRKTAKVIQFDHDQLSVFGIGDELSEAEWRGVVRQLL
AQGLLAVEGEYGTLVLTEESAAVLGRQREVPLRKEPKKPAGSARSAPRGERKAKAAAAVAELPEEAVPVFEALRAWRAAQ
AREQGVPAYVIFHDATLREIAAARPASVADLGGISGVGEKKLATYGEGVLEVLAEAGA

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=260480 C9F11_RS24320 WP_249401869.1 5689354..5691210(+) (recQ) [Streptomyces sp. YIM 121038]
ATGACAGAGGTGGTGGAGAGCGACGCGCTGCGGACGCTCCACCGGGTGTTCGGGTACGACGCTTTCCGGGGCGAGCAAGA
GTCGATCATCGAGCACGTGGTGGCGGGCGGCGACGCGGTCGTCCTGATGCCGACCGGCGGCGGAAAGTCCCTGTGCTATC
AGATCCCGGCCCTGGTCAGACCCGGTACGGGCGTCGTGGTGTCGCCCCTGATCGCACTCATGCAGGACCAGGTCGACGCG
CTGCGGGCCCTCGGCGTGCGCGCCGGGTTCATGAACTCGACGCAGGACTTCGACGAGCGCCGCCTCGTCGAGGCCGAGCT
GCTCTCGGGCGAGCTCGACGTGCTGTATCTGGCACCGGAGCGGCTGCGCCTGGACACCACGCTCCATCTGCTCTCCCGGG
CGAAGATCTCCGTCTTCGCGATCGACGAGGCGCACTGCGTGGCCCAGTGGGGCCACGACTTCCGGCCGGACTACCTGGCC
CTGTCCGTCCTCGGCGAGCGCTGGCCGGACGTCCCGCGCATCGCGCTGACGGCCACGGCGACGGACGCCACGCACCGCGA
GATCACCGAGCGCCTGGCCATGCCGGACGCCAAGCACTTCGTCGCCAGCTTCGACCGGCCGAACATCCAGTACCGGATCG
TGCCGAAGTCCGACCCGAAGAAGCAGCTCCTCACCTTCCTGAAGGAGGAGCACGACGGCGACGCGGGCATCGTCTACTGC
CTCTCGCGCAAGTCGGTCGAGCAGATCGCCGACTTCCTCAGCGCCCACGGAGTCGAGGCGGTGCCGTACCACGCGGGTCT
GGACGGCGGCACCCGCGCCCGGCACCAGTCGCGCTTCCTGCGCGAGGACGGCCTGGTCGTGGTCGCCACGATCGCCTTCG
GCATGGGCATCGACAAGCCGGACGTCCGCTTCGTCGCCCACCTCGACCTGCCCAAGTCGGTGGAGGGGTACTACCAGGAA
ACGGGCCGGGCGGGCCGTGACGGCCTCCCCTCGACGGCCTGGATGGCGTACGGCCTCCAGGACGTCGTGCAGCAGCGCAA
GCTCATCCAGTCCGGCGAGGGCGACGAGGCGTTCCGGCGCCGCTCGGCGGCCCATCTGGACGCGATGCTGGCGCTGTGCG
AGGCGGCCTCCTGCCGCCGCGCCCAGCTCCTGCGGTACTTCGGCCAGGACCCGACGGCCACCGGCTGCGGGAACTGCGAC
ACGTGTCTGACGCCCCCGGAGACCTGGGACGGCACGGTCGCCGCGCAGAAGGTCCTCTCCGCGGTGGTGCGCCTGAAGCG
GGAGCGCGGCCAGAAGTTCGGCACGGGCCAGATCGTCGACATCCTGCTCGGCCGGAAGACCGCCAAGGTCATCCAGTTCG
ACCACGACCAGCTGTCCGTCTTCGGCATCGGTGACGAGCTGAGCGAGGCCGAATGGCGGGGCGTGGTGCGGCAGTTGCTG
GCGCAGGGCCTCCTCGCCGTCGAGGGGGAGTACGGCACGCTGGTGCTGACCGAGGAGAGCGCCGCCGTCCTCGGCCGGCA
GCGGGAGGTGCCGCTGCGCAAGGAGCCGAAGAAGCCCGCGGGGTCGGCGCGGTCCGCGCCGCGGGGGGAGCGCAAGGCCA
AGGCCGCGGCGGCCGTGGCCGAGCTGCCGGAGGAGGCCGTGCCGGTCTTCGAGGCGCTGCGGGCCTGGCGGGCGGCGCAG
GCGCGGGAGCAGGGCGTGCCCGCGTATGTGATCTTCCACGACGCGACGCTGCGGGAGATCGCCGCGGCGCGGCCCGCGTC
CGTCGCGGACCTCGGCGGGATCAGCGGGGTCGGCGAGAAGAAGCTCGCGACGTATGGGGAAGGGGTGCTTGAGGTCCTGG
CGGAGGCCGGGGCGTAG

Domains

Predicted by InterProScan.

RQC domain (RQC)

(405-518)

HRDC domain (HRDC)

(549-613)

Helicase conserved C-terminal domain (Helicase_C)

(221-327)

RecQ zinc-binding (RecQ_Zn_bind)

(340-403)

DEAD/DEAH box helicase (DEAD)

(26-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.474

97.573

0.375

Multiple sequence alignment