Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DSB71_RS26815 Genome accession   NZ_CP030768
Coordinates   5097491..5097967 (+) Length   158 a.a.
NCBI ID   WP_023910200.1    Uniprot ID   -
Organism   Escherichia coli strain 2017C-4173W12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5092491..5102967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS26785 - 5092622..5095138 (+) 2517 WP_001315618.1 hypothetical protein -
  DSB71_RS26790 - 5095214..5095669 (+) 456 WP_000581504.1 IrmA family protein -
  DSB71_RS26795 - 5095748..5095981 (+) 234 WP_001119729.1 DUF905 family protein -
  DSB71_RS26805 - 5096081..5096899 (+) 819 WP_023910202.1 DUF932 domain-containing protein -
  DSB71_RS26810 - 5096990..5097475 (+) 486 WP_000214393.1 antirestriction protein -
  DSB71_RS26815 radC 5097491..5097967 (+) 477 WP_023910200.1 RadC family protein Machinery gene
  DSB71_RS26820 yeeT 5098030..5098251 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  DSB71_RS26825 cbeA 5098325..5098693 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DSB71_RS26830 cbtA 5098782..5099156 (+) 375 WP_001563930.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DSB71_RS26835 yeeW 5099153..5099347 (+) 195 WP_000988600.1 DUF5983 family protein -
  DSB71_RS26840 - 5099393..5099473 (+) 81 Protein_4925 hypothetical protein -
  DSB71_RS30175 - 5099962..5100144 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DSB71_RS26855 tmaR 5100245..5100574 (-) 330 WP_000450409.1 DUF496 family protein -
  DSB71_RS26860 yeeA 5100746..5101804 (-) 1059 WP_001200891.1 FUSC family protein -
  DSB71_RS26865 sbmC 5102002..5102475 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17716.35 Da        Isoelectric Point: 7.2020

>NTDB_id=260428 DSB71_RS26815 WP_023910200.1 5097491..5097967(+) (radC) [Escherichia coli strain 2017C-4173W12]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLVHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=260428 DSB71_RS26815 WP_023910200.1 5097491..5097967(+) (radC) [Escherichia coli strain 2017C-4173W12]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGTGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386